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1MWL
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CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', GENETICIN
Authors:Vicens, Q., Westhof, E.
Deposit date:2002-09-30
Release date:2003-02-18
Last modified:2012-02-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide
J.Mol.Biol., 326, 2003
1LC4
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CRYSTAL STRUCTURE OF TOBRAMYCIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE
Descriptor:5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', TOBRAMYCIN
Authors:Vicens, Q., Westhof, E.
Deposit date:2002-04-05
Release date:2003-04-08
Last modified:2012-02-08
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Crystal Structure of a Complex between the Aminoglycoside Tobramycin and an Oligonucleotide Containing the Ribosomal Decoding A Site
Chem.Biol., 9, 2002
1J7T
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COMPLEX BETWEEN PAROMOMYCIN AND THE 16S-RRNA A-SITE AT 2.5 A RESOLUTION
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', PAROMOMYCIN
Authors:Vicens, Q., Westhof, E.
Deposit date:2001-05-18
Release date:2002-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site.
Structure, 9, 2001
2YIE
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CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH BOUND TO FMN
Descriptor:FMN RIBOSWITCH, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q., Mondragon, E., Batey, R.T.
Deposit date:2011-05-12
Release date:2011-08-31
Last modified:2011-11-09
Method:X-RAY DIFFRACTION (2.941 Å)
Cite:Molecular Sensing by the Aptamer Domain of the Fmn Riboswitch: A General Model for Ligand Binding by Conformational Selection
Nucleic Acids Res., 39, 2011
2YIF
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CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH - FREE STATE
Descriptor:FMN RIBOSWITCH, MAGNESIUM ION, POTASSIUM ION
Authors:Vicens, Q., Mondragon, E., Batey, R.T.
Deposit date:2011-05-12
Release date:2011-08-31
Last modified:2011-11-09
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Molecular Sensing by the Aptamer Domain of the Fmn Riboswitch: A General Model for Ligand Binding by Conformational Selection.
Nucleic Acids Res., 39, 2011
6DN1
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA
Descriptor:RNA RIBOSWITCH, RNA (57-MER), MAGNESIUM ION, ...
Authors:Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DN2
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
Descriptor:RNA RIBOSWITCH, RNA (56-MER), MAGNESIUM ION, ...
Authors:Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DN3
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CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA
Descriptor:RNA RIBOSWITCH, RNA (56-MER), CHLORIDE ION, ...
Authors:Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2018-10-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
5LI0
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70S RIBOSOME FROM STAPHYLOCOCCUS AUREUS
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Khusainov, I., Vicens, Q., Bochler, A., Grosse, F., Myasnikov, A., Menetret, J.F., Chicher, J., Marzi, S., Romby, P., Yusupova, G., Yusupov, M., Hashem, Y.
Deposit date:2016-07-13
Release date:2016-12-28
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of the 70S ribosome from human pathogen Staphylococcus aureus.
Nucleic Acids Res., 44, 2016
5ND8
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HIBERNATING RIBOSOME FROM STAPHYLOCOCCUS AUREUS (UNROTATED STATE)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Khusainov, I., Vicens, Q., Ayupov, R., Usachev, K., Myasnikov, A., Simonetti, A., Validov, S., Kieffer, B., Yusupova, G., Yusupov, M., Hashem, Y.
Deposit date:2017-03-07
Release date:2017-06-28
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
5ND9
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HIBERNATING RIBOSOME FROM STAPHYLOCOCCUS AUREUS (ROTATED STATE)
Descriptor:16S ribosomal RNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ...
Authors:Khusainov, I., Vicens, Q., Ayupov, R., Usachev, K., Myasnikov, A., Simonetti, A., Validov, S., Kieffer, B., Yusupova, G., Yusupov, M., Hashem, Y.
Deposit date:2017-03-07
Release date:2017-06-28
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
5OPT
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STRUCTURE OF KSRP IN CONTEXT OF TRYPANOSOMA CRUZI 40S
Descriptor:Activated protein kinase C receptor, putative, Ribosomal protein S29, ...
Authors:Brito Querido, J., Mancera-Martinez, E., Vicens, Q., Bochler, A., Chicher, J., Simonetti, A., Hashem, Y.
Deposit date:2017-08-10
Release date:2017-11-15
Last modified:2017-12-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:The cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein.
Structure, 25, 2017
5OSG
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STRUCTURE OF KSRP IN CONTEXT OF LEISHMANIA DONOVANI 80S
Descriptor:RNA binding protein, putative, 18S rRNA, ...
Authors:Brito Querido, J., Mancera-Martinez, E., Vicens, Q., Bochler, A., Chicher, J., Simonetti, A., Hashem, Y.
Deposit date:2017-08-17
Release date:2017-11-15
Last modified:2017-12-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein.
Structure, 25, 2017
2ESI
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COMPLEX BETWEEN KANAMYCIN A AND THE 16S-RRNA A SITE.
Descriptor:5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', KANAMYCIN A
Authors:Westhof, E.
Deposit date:2005-10-26
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding
Nucleic Acids Res., 33, 2005
2ESJ
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COMPLEX BETWEEN LIVIDOMYCIN A AND THE 16S-RRNA A SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', (2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMETHYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL
Authors:Westhof, E.
Deposit date:2005-10-26
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding
Nucleic Acids Res., 33, 2005
2ET3
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COMPLEX BETWEEN GENTAMICIN C1A AND THE 16S-RRNA A-SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDROXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL
Authors:Westhof, E.
Deposit date:2005-10-27
Release date:2005-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding.
Nucleic Acids Res., 33, 2005
2ET4
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COMPLEX BETWEEN NEOMYCIN B AND THE 16S-RRNA A-SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', NEOMYCIN
Authors:Westhof, E.
Deposit date:2005-10-27
Release date:2005-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding.
Nucleic Acids Res., 33, 2005
2ET5
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COMPLEX BETWEEN RIBOSTAMYCIN AND THE 16S-RRNA A-SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', RIBOSTAMYCIN, SULFATE ION
Authors:Westhof, E.
Deposit date:2005-10-27
Release date:2005-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding.
Nucleic Acids Res., 33, 2005
2ET8
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COMPLEX BETWEEN NEAMINE AND THE 16S-RRNA A-SITE
Descriptor:5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', (2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-3,4-DIOL
Authors:Westhof, E.
Deposit date:2005-10-27
Release date:2005-12-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding.
Nucleic Acids Res., 33, 2005
5NKO
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SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF S. AUREUS HIBERNATING PROMOTING FACTOR (CTD-SAHPF)
Descriptor:Ribosome hibernation promotion factor
Authors:Usachev, K.S., Khusainov, I.S., Ayupov, R.K., Validov, S.Z., Kieffer, B., Yusupov, M.M.
Deposit date:2017-03-31
Release date:2017-07-05
Last modified:2017-07-26
Method:SOLUTION NMR
Cite:Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.
EMBO J., 36, 2017
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