Author results

413D
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A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
Descriptor:RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
Authors:Tanaka, Y., Fujii, S., Hiroaki, H., Sakata, T., Tanaka, T., Uesugi, S., Tomita, K.-I., Kyogoku, Y.
Deposit date:1998-07-10
Release date:1998-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999
1J2V
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CRYSTAL STRUCTURE OF CUTA1 FROM PYROCOCCUS HORIKOSHII
Descriptor:102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y., Sakai, N., Yasutake, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UKU
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA1 COMPLEXED WITH CU2+
Descriptor:periplasmic divalent cation tolerance protein CutA, COPPER (II) ION
Authors:Tanaka, Y., Yasutake, Y., Yao, M., Sakai, N., Tanaka, I., Tsumoto, K., Kumagai, I.
Deposit date:2003-09-01
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UMJ
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA IN THE PRESENCE OF 3M GUANIDINE HYDROCHLORIDE
Descriptor:periplasmic divalent cation tolerance protein CutA, GUANIDINE
Authors:Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I.
Deposit date:2003-10-02
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
1VBF
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CRYSTAL STRUCTURE OF PROTEIN L-ISOASPARTATE O-METHYLTRANSFERASE HOMOLOGUE FROM SULFOLOBUS TOKODAII
Descriptor:231aa long hypothetical protein-L-isoaspartate O-methyltransferase
Authors:Tanaka, Y., Tsumoto, K., Yasutake, Y., Umetsu, M., Yao, M., Tanaka, I., Fukada, H., Kumagai, I.
Deposit date:2004-02-25
Release date:2004-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:How Oligomerization Contributes to the Thermostability of an Archaeon Protein: PROTEIN L-ISOASPARTYL-O-METHYLTRANSFERASE FROM SULFOLOBUS TOKODAII
J.Biol.Chem., 279, 2004
1WV3
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CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HYPOTHETICAL PROTEIN SAV0287 FROM STAPHYLOCOCCUS AUREUS
Descriptor:similar to DNA segregation ATPase and related proteins, CHLORIDE ION
Authors:Tanaka, Y., Yasutake, Y., Tanaka, I.
Deposit date:2004-12-10
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus.
Proteins, 69, 2007
2DG0
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CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS
Descriptor:DrP35
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DG1
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CRYSTAL STRUCTURE OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS, COMPLEXED WITH CA2+
Descriptor:DrP35, CALCIUM ION, GLYCEROL
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-07
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DSO
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CRYSTAL STRUCTURE OF D138N MUTANT OF DRP35, A 35KDA DRUG RESPONSIVE PROTEIN FROM STAPHYLOCOCCUS AUREUS
Descriptor:Drp35, CALCIUM ION, GLYCEROL
Authors:Tanaka, Y., Ohki, Y., Morikawa, K., Yao, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-07-04
Release date:2006-12-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
2DGJ
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CRYSTAL STRUCTURE OF EBHA (756-1003 DOMAIN) FROM STAPHYLOCOCCUS AUREUS
Descriptor:hypothetical protein ebhA, SULFATE ION, ACETIC ACID, ...
Authors:Tanaka, Y., Yao, M., Kuroda, M., Watanabe, N., Ohta, T., Tanaka, I.
Deposit date:2006-03-14
Release date:2007-03-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
1J08
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CRYSTAL STRUCTURE OF GLUTAREDOXIN-LIKE PROTEIN FROM PYROCOCCUS HORIKOSHII
Descriptor:glutaredoxin-like protein
Authors:Tanaka, Y., Tanabe, E., Tsumoto, K., Kumagai, I., Yao, M., Tanaka, I.
Deposit date:2002-11-11
Release date:2003-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein disulfide isomerase from hyperthermophile as an additives of refolding of an immunoglobulin-folded protein
To be Published
1WU7
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CRYSTAL STRUCTURE OF HISTIDYL-TRNA SYNTHETASE FROM THERMOPLASMA ACIDOPHILUM
Descriptor:Histidyl-tRNA synthetase
Authors:Tanaka, Y., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I.
Deposit date:2004-12-01
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum
To be Published
2DGD
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CRYSTAL STRUCTURE OF ST0656, A FUNCTION UNKNOWN PROTEIN FROM SULFOLOBUS TOKODAII
Descriptor:223aa long hypothetical arylmalonate decarboxylase, GLYCEROL
Authors:Tanaka, Y., Sasaki, T., Tanabe, E., Yao, M., Tanaka, I., Kumagai, I., Tsumoto, K.
Deposit date:2006-03-10
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ST0656, a function unknown protein from Sulfolobus tokodaii
To be Published
1C4L
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SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
Descriptor:RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3'), RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3')
Authors:Tanaka, Y., Kojima, C., Yamazaki, T., Kodama, T.S., Yasuno, K., Miyashita, S., Ono, A.M., Ono, A.S., Kainosho, M., Kyogoku, Y.
Deposit date:1999-08-30
Release date:2000-08-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
5AWW
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PRECISE RESTING STATE OF THERMUS THERMOPHILUS SECYEG
Descriptor:Protein translocase subunit SecY, Protein translocase subunit SecE, Putative preprotein translocase, ...
Authors:Tanaka, Y., Sugano, Y., Takemoto, M., Kusakizako, T., Kumazaki, K., Ishitani, R., Nureki, O., Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2015-12-16
Method:X-RAY DIFFRACTION (2.724 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
5CH4
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PEPTIDE-BOUND STATE OF THERMUS THERMOPHILUS SECYEG
Descriptor:Protein translocase subunit SecY, Protein translocase subunit SecE, Putative preprotein translocase, ...
Authors:Tanaka, Y., Sugano, Y., Takemoto, M., Kusakizako, T., Kumazaki, K., Ishitani, R., Nureki, O., Tsukazaki, T.
Deposit date:2015-07-10
Release date:2015-11-25
Last modified:2015-12-23
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
1HLV
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CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA
Descriptor:CENP-B BOX DNA, MAJOR CENTROMERE AUTOANTIGEN B
Authors:Tanaka, Y., Nureki, O., Kurumizaka, H., Fukai, S., Kawaguchi, S., Ikuta, M., Iwahara, J., Okazaki, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-12-04
Release date:2002-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.
EMBO J., 20, 2001
1WM9
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STRUCTURE OF GTP CYCLOHYDROLASE I FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP cyclohydrolase I, ZINC ION
Authors:Tanaka, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-05
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.
J.Biochem.(Tokyo), 138, 2005
1WUQ
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STRUCTURE OF GTP CYCLOHYDROLASE I COMPLEXED WITH 8-OXO-GTP
Descriptor:GTP cyclohydrolase I, ZINC ION, 8-OXO-GUANOSINE-5'-TRIPHOSPHATE
Authors:Tanaka, Y., Nakagawa, N., Masui, R., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-08
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
1WUR
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STRUCTURE OF GTP CYCLOHYDROLASE I COMPLEXED WITH 8-OXO-DGTP
Descriptor:GTP cyclohydrolase I, ZINC ION, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
Authors:Tanaka, Y., Nakagawa, N., Masui, R., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-08
Release date:2005-07-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
J.Biochem.(Tokyo), 138, 2005
2D5Y
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ASPARTATE AMINOTRANSFERASE MUTANT MC WITH ISOVALERIC ACID
Descriptor:Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, ISOVALERIC ACID
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-08
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
2D61
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ASPARTATE AMINOTRANSFERASE MUTANT MA WITH MALEIC ACID
Descriptor:Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, MALEIC ACID
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-08
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
2D63
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ASPARTATE AMINOTRANSFERASE MUTANT MA WITH ISOVALERIC ACID
Descriptor:Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, ISOVALERIC ACID
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-09
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
2D64
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ASPARTATE AMINOTRANSFERASE MUTANT MABC WITH ISOVALERIC ACID
Descriptor:Aspartate aminotransferase, PYRIDOXAL-5'-PHOSPHATE, ISOVALERIC ACID
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-09
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published
2D65
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ASPARTATE AMINOTRANSFERASE MUTANT MABC
Descriptor:Aspartate aminotransferase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Tanaka, Y., Nakagawa, N., Tada, H., Yano, T., Masui, R., Kuramitsu, S.
Deposit date:2005-11-09
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Structures of Aspartate Aminotransferase with Mutations of Non-Active-Site Residues
To be Published