Author results

2VH5
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CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (DISULFIDE FREE MUTANT) COMPLEX
Descriptor:ANTI-RAS FV HEAVY CHAIN, ANTI-RAS FV LIGHT CHAIN, GTPASE HRAS, ...
Authors:Tanaka, T., Williams, R.L., Rabbitts, T.H.
Deposit date:2007-11-19
Release date:2008-01-22
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional Intracellular Antibody Fragments Do not Require Invariant Intra-Domain Disulfide Bonds.
J.Mol.Biol., 376, 2008
1BXD
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NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ
Descriptor:PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)), PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.
Deposit date:1998-10-02
Release date:1999-10-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ.
Nature, 396, 1998
1HZK
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SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE
Descriptor:C-1027 APOPROTEIN
Authors:Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.
Deposit date:2001-01-25
Release date:2001-05-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore.
J.Mol.Biol., 309, 2001
1HZL
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SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE
Descriptor:C-1027 APOPROTEIN, C-1027 AROMATIZED CHROMOPHORE
Authors:Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.
Deposit date:2001-01-25
Release date:2001-05-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore.
J.Mol.Biol., 309, 2001
1V4R
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SOLUTION STRUCTURE OF STREPTMYCAL REPRESSOR TRAR
Descriptor:Transcriptional Repressor
Authors:Tanaka, T., Komatsu, C., Kobayashi, K., Sugai, M., Kataoka, M., Kohno, T.
Deposit date:2003-11-17
Release date:2005-03-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Streptmycal repressor TraR
TO BE PUBLISHED
5Z4B
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GB1 STRUCTURE DETERMINATION IN LIVING EUKARYOTIC CELLS BY IN-CELL NMR SPECTROSCOPY
Descriptor:Protein LG
Authors:Tanaka, T., Teppei, I., Kamoshida, H., Mishima, M., Shirakawa, M., Guentert, P., Ito, Y.
Deposit date:2018-01-10
Release date:2019-01-23
Method:SOLUTION NMR
Cite:GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy
To Be Published
1IKU
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MYRISTOYLATED RECOVERIN IN THE CALCIUM-FREE STATE, NMR, 22 STRUCTURES
Descriptor:RECOVERIN, MYRISTIC ACID
Authors:Tanaka, T., Ames, J.B., Harvey, T.S., Stryer, L., Ikura, M.
Deposit date:1996-01-18
Release date:1996-07-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Sequestration of the membrane-targeting myristoyl group of recoverin in the calcium-free state.
Nature, 376, 1995
2UZI
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CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV COMPLEX
Descriptor:ANTI-RAS FV HEAVY CHAIN, ANTI-RAS FV LIGHT CHAIN, GTPASE HRAS, ...
Authors:Tanaka, T., williams, R.L., Rabbitts, T.H.
Deposit date:2007-04-27
Release date:2007-06-26
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tumour Prevention by a Single Antibody Domain Targeting the Interaction of Signal Transduction Proteins with Ras.
Embo J., 26, 2007
2YY6
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CRYSTAL STRUCTURE OF THE PHOSPHOGLYCOLATE PHOSPHATASE FROM AQUIFEX AEOLICUS VF5
Descriptor:phosphoglycolate phosphatase, SULFATE ION
Authors:Tanaka, T., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5
To be Published
3X3U
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CRYSTAL STRUCTURE OF WILD-TYPE OF E. COLI CUTA1
Descriptor:Divalent-cation tolerance protein CutA
Authors:Tanaka, T., Matsuura, Y., Yutani, K.
Deposit date:2015-02-12
Release date:2015-04-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of wild-type of E. coli CutA1
To be Published
4Y65
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CRYSTAL STRUCTURE OF E.COLI CUTA1 C16A/C39A/C79A MUTATION
Descriptor:Divalent-cation tolerance protein CutA
Authors:Tanaka, T., Matsuura, Y., Yutani, K.
Deposit date:2015-02-12
Release date:2015-04-15
Last modified:2015-11-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation
To Be Published
4Y6I
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CRYSTAL STRUCTURE OF E.COLI CUTA1 E61V/C16A/C39A/C79A MUTATION
Descriptor:Divalent-cation tolerance protein CutA
Authors:Tanaka, T., Matsuura, Y., Yutani, K.
Deposit date:2015-02-13
Release date:2015-09-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation
To Be Published
2RRN
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SOLUTION STRUCTURE OF SECDF PERIPLASMIC DOMAIN P4
Descriptor:Probable SecDF protein-export membrane protein
Authors:Tanaka, T., Tsukazaki, T., Echizen, Y., Nureki, O., Kohno, T.
Deposit date:2011-01-30
Release date:2011-05-18
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
3U6Y
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CRYSTAL STRUCTURE OF ALBA2-DNA COMPLEX
Descriptor:DNA/RNA-binding protein Alba 2, DNA (5'-D(*CP*CP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*G)-3'), ...
Authors:Kumarevel, T., Tanaka, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-10-13
Release date:2012-02-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of archaeal chromatin protein Alba2-dsDNA complex from Aeropyrum pernix K1
J.Biol.Chem., 2012
2E85
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CRYSTAL STRUCTURE OF THE HYDROGENASE 3 MATURATION PROTEASE
Descriptor:Hydrogenase 3 maturation protease, CALCIUM ION
Authors:Tanaka, T., Kumarevel, T.S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-18
Release date:2008-01-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of hydrogenase maturating endopeptidase HycI from Escherichia coli
Biochem.Biophys.Res.Commun., 389, 2009
2H09
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CRYSTAL STRUCTURE OF DIPHTHERIA TOXIN REPRESSOR LIKE PROTEIN FROM E. COLI
Descriptor:Transcriptional regulator mntR
Authors:Kumarevel, T.S., Tanaka, T., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-14
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the manganese transport regulatory protein from Escherichia coli.
Proteins, 2009
2YSW
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CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE FROM AQUIFEX AEOLICUS VF5
Descriptor:3-dehydroquinate dehydratase
Authors:Tanaka, T., Kumarevel, T.S., Ebihara, A., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-04
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5
To be Published
413D
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A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
Descriptor:RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
Authors:Tanaka, Y., Fujii, S., Hiroaki, H., Sakata, T., Tanaka, T., Uesugi, S., Tomita, K.-I., Kyogoku, Y.
Deposit date:1998-07-10
Release date:1998-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999
3WXQ
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SERIAL FEMTOSECOND X-RAY STRUCTURE OF HUMAN FATTY ACID-BINDING PROTEIN TYPE-3 (FABP3) IN COMPLEX WITH STEARIC ACID (C18:0) DETERMINED USING X-RAY FREE-ELECTRON LASER AT SACLA
Descriptor:Fatty acid-binding protein, heart, STEARIC ACID
Authors:Mizohata, E., Suzuki, M., Kakinouchi, K., Sugiyama, S., Murata, M., Sugahara, M., Nango, E., Tanaka, T., Tanaka, R., Tono, K., Song, C., Hatsui, T., Joti, Y., Yabashi, M., Iwata, S.
Deposit date:2014-08-04
Release date:2014-11-05
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat. Methods, 12, 2015
3WXS
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THAUMATIN STRUCTURE DETERMINED BY SPRING-8 ANGSTROM COMPACT FREE ELECTRON LASER (SACLA)
Descriptor:thaumatin I, L(+)-TARTARIC ACID
Authors:Masuda, T., Nango, E., Sugahara, M., Mizohata, E., Tanaka, T., Tanaka, R., Suzuki, M., Mikami, B., Iwata, S.
Deposit date:2014-08-07
Release date:2014-11-05
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat. Methods, 12, 2015
2E1X
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NMR STRUCTURE OF THE HIV-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION
Authors:Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.
Deposit date:2006-11-03
Release date:2007-06-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality
Biochem.Biophys.Res.Commun., 358, 2007
2EC7
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SOLUTION STRUCTURE OF HUMAN IMMUNODIFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag polyprotein (Pr55Gag), ZINC ION
Authors:Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.
Deposit date:2007-02-10
Release date:2008-02-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
Biochemistry, 48, 2009
2RRC
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SOLUTION STRUCTURE OF RNA APTAMER AGAINST AML1 RUNT DOMAIN
Descriptor:5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
Authors:Nomura, Y., Fujiwara, K., Chiba, M., Fukunaga, J., Tanaka, Y., Iibuchi, H., Tanaka, T., Nakamura, Y., Kawai, G., Kozu, T., Sakamoto, T.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
3WN6
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CRYSTAL STRUCTURE OF ALPHA-AMYLASE AMYI-1 FROM ORYZA SATIVA
Descriptor:Alpha-amylase, CALCIUM ION, GLYCEROL, ...
Authors:Ochiai, A., Sugai, H., Harada, K., Tanaka, S., Ishiyama, Y., Ito, K., Tanaka, T., Uchiumi, T., Taniguchi, M., Mitsui, T.
Deposit date:2013-12-05
Release date:2014-09-10
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
4W4Q
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GLUCOSE ISOMERASE STRUCTURE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY AT SACLA
Descriptor:Xylose isomerase, CALCIUM ION
Authors:Nango, E., Tanaka, T., Sugahara, M., Suzuki, M., Iwata, S.
Deposit date:2014-08-15
Release date:2014-11-05
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Grease matrix as a versatile carrier of proteins for serial crystallography
Nat.Methods, 12, 2015