Author results

6VME
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HUMAN ESCRT-I HETEROTETRAMER HEADPIECE
Descriptor:Tumor susceptibility gene 101 protein, Vacuolar protein sorting-associated protein 37B, Multivesicular body subunit 12A, ...
Authors:Flower, T.G., Hurley, J.H., Tjahjono, N.
Deposit date:2020-01-27
Release date:2020-05-20
Last modified:2020-06-24
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:A helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission.
Nat.Struct.Mol.Biol., 27, 2020
6KFZ
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SUFS FROM BACILLUS SUBTILIS, SOAKED WITH L-CYSTEINE FOR 90 SEC AT 1.96 ANGSTROM RESOLUTION
Descriptor:Cysteine desulfurase SufS, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R., Takahashi, Y., Fujishiro, T.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
6KG0
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NIFS FROM HELICOBACTER PYLORI, SOAKED WITH L-CYSTEINE FOR 118 SEC
Descriptor:Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, CHLORIDE ION, ...
Authors:Nakamura, R., Takahashi, Y., Fujishiro, T.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
6KG1
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NIFS FROM HELICOBACTER PYLORI, SOAKED WITH L-CYSTEINE FOR 180 SEC
Descriptor:Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, CHLORIDE ION, ...
Authors:Nakamura, R., Takahashi, Y., Fujishiro, T.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
6K0T
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-17
Descriptor:Peroxisome proliferator-activated receptor gamma, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1~{E})-1-[8-[(8-chloranyl-2-cyclopropyl-imidazo[1,2-a]pyridin-3-yl)methyl]-3-fluoranyl-6~{H}-benzo[c][1]benzoxepin-11-ylidene]ethyl]-4~{H}-1,2,4-oxadiazol-5-one
Authors:Suzuki, M., Yamamoto, K., Takahashi, Y., Saito, J.
Deposit date:2019-05-07
Release date:2019-10-30
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Development of a novel class of peroxisome proliferator-activated receptor (PPAR) gamma ligands as an anticancer agent with a unique binding mode based on a non-thiazolidinedione scaffold.
Bioorg.Med.Chem., 27, 2019
6JZV
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CRYSTAL STRUCTURE OF SUFU FROM BACILLUS SUBTILIS
Descriptor:Zinc-dependent sulfurtransferase SufU, ZINC ION
Authors:Fujishiro, T., Takahashi, Y.
Deposit date:2019-05-04
Release date:2020-05-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
6JZW
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CRYSTAL STRUCTURE OF SUFU FROM BACILLUS SUBTILIS WITH CYS PERSULFURATED
Descriptor:Zinc-dependent sulfurtransferase SufU, ZINC ION
Authors:Fujishiro, T., Takahashi, Y.
Deposit date:2019-05-04
Release date:2020-05-06
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
6JO5
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STRUCTURE OF THE GREEN ALGAL PHOTOSYSTEM I SUPERCOMPLEX WITH LIGHT-HARVESTING COMPLEX I
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Suga, M., Miyazaki, N., Takahashi, Y.
Deposit date:2019-03-20
Release date:2019-06-19
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
6JO6
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STRUCTURE OF THE GREEN ALGAL PHOTOSYSTEM I SUPERCOMPLEX WITH LIGHT-HARVESTING COMPLEX I
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Suga, M., Miyazaki, N., Takahashi, Y.
Deposit date:2019-03-20
Release date:2019-06-19
Last modified:2019-06-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I.
Nat.Plants, 5, 2019
6N5B
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:antibody heavy chain, antibody light chain, Hemagglutinin, ...
Authors:Bajic, G., Maron, M.J., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 25, 2019
6N5D
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:Hemagglutinin, antibody heavy chain, antibody light chain
Authors:Bajic, G., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 25, 2019
6N5E
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BROADLY PROTECTIVE ANTIBODIES DIRECTED TO A SUBDOMINANT INFLUENZA HEMAGGLUTININ EPITOPE
Descriptor:Hemagglutinin, FL-1066 heavy chain, FL-1066 light chain, ...
Authors:Bajic, G., Schmidt, A.G.
Deposit date:2018-11-21
Release date:2019-06-05
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Influenza Antigen Engineering Focuses Immune Responses to a Subdominant but Broadly Protective Viral Epitope.
Cell Host Microbe, 25, 2019
6IOP
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THE LIGAND BINDING DOMAIN OF MLP24
Descriptor:Methyl-accepting chemotaxis protein, CALCIUM ION, ACETATE ION, ...
Authors:Sumita, K., Takahashi, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOQ
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THE LIGAND BINDING DOMAIN OF MLP24 WITH GLYCINE
Descriptor:Methyl-accepting chemotaxis protein, GLYCINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOR
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ASPARAGINE
Descriptor:Methyl-accepting chemotaxis protein, ASPARAGINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOS
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THE LIGAND BINDING DOMAIN OF MLP24 WITH PROLINE
Descriptor:Methyl-accepting chemotaxis protein, PROLINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOT
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ARGININE
Descriptor:Methyl-accepting chemotaxis protein, ARGININE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOU
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THE LIGAND BINDING DOMAIN OF MLP24 WITH SERINE
Descriptor:Methyl-accepting chemotaxis protein, SERINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOV
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THE LIGAND BINDING DOMAIN OF MLP37 WITH ARGININE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, ARGININE
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2020-05-20
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Structural basis of the binding affinity of chemoreceptors Mlp24p and Mlp37p for various amino acids.
Biochem.Biophys.Res.Commun., 523, 2020
6IMU
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THE APO-STRUCTURE OF ENDO-BETA-1,2-GLUCANASE FROM TALAROMYCES FUNICULOSUS
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, GLYCEROL, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6IMV
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THE COMPLEX STRUCTURE OF ENDO-BETA-1,2-GLUCANASE FROM TALAROMYCES FUNICULOSUS WITH SOPHOROSE
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GLUCOSE, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6IMW
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THE COMPLEX STRUCTURE OF ENDO-BETA-1,2-GLUCANASE MUTANT (E262Q) FROM TALAROMYCES FUNICULOSUS WITH BETA-1,2-GLUCAN
Descriptor:Endo-beta-1,2-glucanase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GLUCOSE, ...
Authors:Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.
Deposit date:2018-10-23
Release date:2019-04-10
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification, characterization, and structural analyses of a fungal endo-beta-1,2-glucanase reveal a new glycoside hydrolase family.
J.Biol.Chem., 294, 2019
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
6E56
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HUMAN ANTIBODY H2214 IN COMPLEX WITH INFLUENZA HEMAGGLUTININ A/AICHI/2/1968 (X-31) (H3N2)
Descriptor:Hemagglutinin, antibody H2214 heavy chain, antibody H2214 light chain, ...
Authors:McCarthy, K.R., Harrison, S.C.
Deposit date:2018-07-19
Release date:2019-05-22
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Antibodies to a Conserved Influenza Head Interface Epitope Protect by an IgG Subtype-Dependent Mechanism.
Cell, 177, 2019
6E4X
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HUMAN ANTIBODY S5V2-29 IN COMPLEX WITH INFLUENZA HEMAGGLUTININ A/TEXAS/50/2012 (H3N2)
Descriptor:Hemagglutinin, S5V2-29 light chain, S5V2-29 heavy chain, ...
Authors:McCarthy, K.R., Harrison, S.C.
Deposit date:2018-07-18
Release date:2019-05-22
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Antibodies to a Conserved Influenza Head Interface Epitope Protect by an IgG Subtype-Dependent Mechanism.
Cell, 177, 2019