Author results

3WNP
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D308A, F268V, D469Y, A513V, AND Y515S QUINTUPLE MUTANT OF BACILLUS CIRCULANS T-3040 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH ISOMALTOUNDECAOSE
Descriptor:Cycloisomaltooligosaccharide glucanotransferase, CALCIUM ION, SODIUM ION, ...
Authors:Suzuki, R., Suzuki, N., Fujimoto, Z., Momma, M., Kimura, K., Kitamura, S., Kimura, A., Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular engineering of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040: structural determinants for the reaction product size and reactivity.
Biochem.J., 2015
2ZQN
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CRYSTAL STRUCTURE OF THE EARTHWORM R-TYPE LECTIN C-HALF IN COMPLEX WITH LACTOSE
Descriptor:29-kDa galactose-binding lectin, BETA-D-GLUCOSE, BETA-D-GALACTOSE, ...
Authors:Suzuki, R., Kuno, A., Hasegawa, T., Hirabayashi, J., Kasai, K., Momma, M., Fujimoto, Z.
Deposit date:2008-08-13
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Sugar-complex structures of the C-half domain of the galactose-binding lectin EW29 from the earthworm Lumbricus terrestris
Acta Crystallogr.,Sect.D, 65, 2009
2ZQO
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CRYSTAL STRUCTURE OF THE EARTHWORM R-TYPE LECTIN C-HALF IN COMPLEX WITH GALNAC
Descriptor:29-kDa galactose-binding lectin, N-ACETYL-D-GALACTOSAMINE, CADMIUM ION, ...
Authors:Suzuki, R., Kuno, A., Hasegawa, T., Hirabayashi, J., Kasai, K., Momma, M., Fujimoto, Z.
Deposit date:2008-08-13
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sugar-complex structures of the C-half domain of the galactose-binding lectin EW29 from the earthworm Lumbricus terrestris
Acta Crystallogr.,Sect.D, 65, 2009
2RQF
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SOLUTION STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM IN COMPLEX WITH JH III
Descriptor:Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
Authors:Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.
Deposit date:2009-04-27
Release date:2010-05-05
Last modified:2013-06-19
Method:SOLUTION NMR
Cite:Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
2Z8D
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8E
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH GALACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8F
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
3AHC
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RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH INORGANIC PHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHG
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H64A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH A TRICYCLIC RING FORM OF THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
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H142A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
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H320A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
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H553A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
5GQD
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CRYSTAL STRUCTURE OF COVALENT GLYCOSYL-ENZYME INTERMEDIATE OF XYLANASE MUTANT (T82A, N127S, AND E128H) FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:Beta-xylanase, BETA-D-XYLOPYRANOSE, XYLOPYRANOSE, ...
Authors:Suzuki, R., Fujimoto, Z., Kaneko, S., Kuno, A.
Deposit date:2016-08-07
Release date:2017-08-09
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Azidolysis by the Formation of Stable Ser-His Catalytic Dyad in a Glycoside Hydrolase Family 10 Xylanase Mutant
J.Appl.Glyosci., 65, 2019
5GQE
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CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF XYLANASE MUTANT (T82A, N127S, AND E128H) FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:Beta-xylanase, BETA-D-XYLOPYRANOSE
Authors:Suzuki, R., Fujimoto, Z., Kaneko, S., Kuno, A.
Deposit date:2016-08-07
Release date:2017-08-09
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Azidolysis by the Formation of Stable Ser-His Catalytic Dyad in a Glycoside Hydrolase Family 10 Xylanase Mutant
J.Appl.Glyosci., 65, 2019
1IX5
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SOLUTION STRUCTURE OF THE METHANOCOCCUS THERMOLITHOTROPHICUS FKBP
Descriptor:FKBP
Authors:Suzuki, R., Nagata, K., Kawakami, M., Nemoto, N., Furutani, M., Adachi, K., Maruyama, T., Tanokura, M.
Deposit date:2002-06-12
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
2D1Z
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CRYSTAL STRUCTURE OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, SULFATE ION, GLYCEROL
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2D20
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CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, XYLOPYRANOSE, P-NITROPHENOL, ...
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2D22
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CRYSTAL STRUCTURE OF COVALENT GLYCOSYL-ENZYME INTERMEDIATE OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, XYLOPYRANOSE, SULFATE ION, ...
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2D23
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CRYSTAL STRUCTURE OF EP COMPLEX OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, XYLOPYRANOSE, AZIDE ION, ...
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2D24
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CRYSTAL STRUCTURE OF ES COMPLEX OF CATALYTIC-SITE MUTANT XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86
Descriptor:ENDO-1,4-BETA-D-XYLANASE, XYLOPYRANOSE, SULFATE ION, ...
Authors:Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.
Deposit date:2005-09-02
Release date:2006-10-10
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic snapshots of an entire reaction cycle for a retaining xylanase from Streptomyces olivaceoviridis E-86
J.Biochem., 146, 2009
2RNN
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SOLUTION STRUCTURE OF THE N-TERMINAL SAP DOMAIN OF SUMO E3 LIGASES FROM SACCHAROMYCES CEREVISIAE
Descriptor:E3 SUMO-protein ligase SIZ1
Authors:Suzuki, R., Shindo, H., Tase, A., Yamazaki, T.
Deposit date:2008-01-30
Release date:2008-12-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
Proteins, 75, 2009
2RNO
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SOLUTION STRUCTURE OF THE N-TERMINAL SAP DOMAIN OF SUMO E3 LIGASES FROM ORYZA SATIVA
Descriptor:Putative DNA-binding protein
Authors:Suzuki, R., Shindo, H., Tase, A., Yamazaki, T.
Deposit date:2008-01-30
Release date:2008-12-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
Proteins, 75, 2009
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