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6M6B
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BU of 6m6b by Molmil
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
6M6A
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BU of 6m6a by Molmil
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
6M6C
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BU of 6m6c by Molmil
CryoEM structure of Thermus thermophilus RNA polymerase elongation complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
5LUS
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BU of 5lus by Molmil
Structures of DHBN domain of Pelecanus crispus BLM helicase
Descriptor: BLM helicase
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUP
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BU of 5lup by Molmil
Structures of DHBN domain of human BLM helicase
Descriptor: BLM protein, PHOSPHATE ION, POTASSIUM ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.032 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUT
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BU of 5lut by Molmil
Structures of DHBN domain of Gallus gallus BLM helicase
Descriptor: BLM helicase, PHOSPHATE ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5GNG
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BU of 5gng by Molmil
Crystal Structure of BioG from Haemophilus influenzae at 1.26 Angstroms resolution
Descriptor: Uncharacterized protein HI_1552
Authors:Shi, J, Guo, Z.
Deposit date:2016-07-20
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
3IKK
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BU of 3ikk by Molmil
Crystal structure analysis of msp domain
Descriptor: Vesicle-associated membrane protein-associated protein B/C
Authors:Shi, J, Lua, S, Song, J.
Deposit date:2009-08-06
Release date:2010-05-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Elimination of the native structure and solubility of the hVAPB MSP domain by the Pro56Ser mutation that causes amyotrophic lateral sclerosis.
Biochemistry, 49, 2010
5H3B
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BU of 5h3b by Molmil
Crystal Structure of SeMet-BioG from Haemophilus influenzae at 1.49 Angstroms resolution
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Uncharacterized protein HI_1552
Authors:Shi, J, Guo, Z.
Deposit date:2016-10-21
Release date:2016-12-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.492 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
6J31
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BU of 6j31 by Molmil
Crystal Structure Analysis of the Glycotransferase of kitacinnamycin
Descriptor: (2E,2'E)-3,3'-(1,2-phenylene)di(prop-2-enoic acid), DBB-DSG-VAL-MEA-VAL-GLY-GLY-DVA-DLE, kcn28
Authors:Shi, J, Liu, C.L, Zhang, B, Guo, W.J, Zhu, J.P, Xu, X, Xu, Q, Jiao, R.H, Tan, R.X, Ge, H.M.
Deposit date:2019-01-03
Release date:2020-01-15
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.244 Å)
Cite:Genome mining and biosynthesis of kitacinnamycins as a STING activator.
Chem Sci, 10, 2019
6J32
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BU of 6j32 by Molmil
Crystal Structure Analysis of the Glycotransferase of kitacinnamycin
Descriptor: Kcn28
Authors:Shi, J, Liu, C.L, Zhang, B, Guo, W.J, Zhu, J.P, Xu, X, Xu, Q, Jiao, R.H, Tan, R.X, Ge, H.M.
Deposit date:2019-01-03
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Genome mining and biosynthesis of kitacinnamycins as a STING activator.
Chem Sci, 10, 2019
6K4Y
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BU of 6k4y by Molmil
CryoEM structure of sigma appropriation complex
Descriptor: 10 kDa anti-sigma factor, DNA (60-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2019-05-27
Release date:2019-08-07
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis of sigma appropriation.
Nucleic Acids Res., 47, 2019
7D7D
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BU of 7d7d by Molmil
CryoEM structure of gp45-dependent transcription activation complex
Descriptor: DNA (nontemplate strand), DNA (template strand), DNA polymerase clamp, ...
Authors:Shi, J, Wen, A, Jin, S, Feng, Y.
Deposit date:2020-10-03
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Transcription activation by a sliding clamp.
Nat Commun, 12, 2021
7D7C
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BU of 7d7c by Molmil
CryoEM structure of gp55-dependent RNA polymerase-promoter open complex
Descriptor: DNA (nontemplate strand), DNA (template strand), DNA-directed RNA polymerase subunit alpha, ...
Authors:Shi, J, Wen, A, Jin, S, Feng, Y.
Deposit date:2020-10-03
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Transcription activation by a sliding clamp.
Nat Commun, 12, 2021
5MK5
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BU of 5mk5 by Molmil
Structures of DHBN domain of human BLM helicase
Descriptor: Bloom syndrome protein, IODIDE ION, POTASSIUM ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-12-02
Release date:2017-03-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
2VLM
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BU of 2vlm by Molmil
The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain
Descriptor: JM22 TCR ALPHA CHAIN, JM22 TCR BETA CHAIN
Authors:Ishizuka, J, Stewart-Jones, G, Van der Merwe, A, Bell, J, McMichael, A, Jones, Y.
Deposit date:2008-01-15
Release date:2008-01-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:The Structural Dynamics and Energetics of an Immunodominant T-Cell Receptor are Programmed by its Vbeta Domain
Immunity, 28, 2008
5XW4
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BU of 5xw4 by Molmil
Crystal structure of budding yeast Cdc14p (wild type) in the apo state
Descriptor: Tyrosine-protein phosphatase CDC14
Authors:Kobayashi, J, Matsuura, Y.
Deposit date:2017-06-29
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and dimerization of the catalytic domain of the protein phosphatase Cdc14p, a key regulator of mitotic exit in Saccharomyces cerevisiae
Protein Sci., 26, 2017
5XW5
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BU of 5xw5 by Molmil
Crystal structure of budding yeast Cdc14p (C283S) bound to a Swi6p phosphopeptide
Descriptor: Regulatory protein SWI6, SULFATE ION, Tyrosine-protein phosphatase CDC14
Authors:Kobayashi, J, Matsuura, Y.
Deposit date:2017-06-29
Release date:2017-08-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and dimerization of the catalytic domain of the protein phosphatase Cdc14p, a key regulator of mitotic exit in Saccharomyces cerevisiae
Protein Sci., 26, 2017
3DQS
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BU of 3dqs by Molmil
Structure of endothelial NOS heme domain in complex with a inhibitor (+-)-N1-{cis-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(4'-chlorobenzyl)ethane-1,2-diamine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, CACODYLATE ION, ...
Authors:Igarashi, J, Li, H, Poulos, T.L.
Deposit date:2008-07-09
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structures of constitutive nitric oxide synthases in complex with de novo designed inhibitors.
J.Med.Chem., 52, 2009
3DQR
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BU of 3dqr by Molmil
Structure of neuronal NOS D597N/M336V mutant heme domain in complex with a inhibitor (+-)-N1-{cis-4'-[(6"-aminopyridin-2"-yl)methyl]pyrrolidin-3'-yl}ethane-1,2-diamine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-{(3S,4S)-4-[(6-aminopyridin-2-yl)methyl]pyrrolidin-3-yl}ethane-1,2-diamine, ...
Authors:Igarashi, J, Li, H, Poulos, T.L.
Deposit date:2008-07-09
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of constitutive nitric oxide synthases in complex with de novo designed inhibitors.
J.Med.Chem., 52, 2009
3DQT
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BU of 3dqt by Molmil
Structure of endothelial NOS heme domain in complex with a inhibitor (+-)-N1-{trans-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-chlorobenzyl)ethane-1,2-diamine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, CACODYLATE ION, ...
Authors:Igarashi, J, Li, H, Poulos, T.L.
Deposit date:2008-07-09
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Crystal structures of constitutive nitric oxide synthases in complex with de novo designed inhibitors.
J.Med.Chem., 52, 2009
6LXG
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BU of 6lxg by Molmil
NMR solution structure of regulatory ACT domain of the Mycobacterium tuberculosis Rel protein
Descriptor: GTP pyrophosphokinase
Authors:Shin, J, Singal, B, Manimekalai, M.S.S, Gruber, G.
Deposit date:2020-02-11
Release date:2020-11-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Atomic structure of, and valine binding to the regulatory ACT domain of the Mycobacterium tuberculosis Rel protein.
Febs J., 288, 2021
8WFB
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BU of 8wfb by Molmil
Cryo-EM structure of the dPspCas13b-ADAR2-crRNA-target RNA complex
Descriptor: INOSITOL HEXAKISPHOSPHATE, ZINC ION, crRNA, ...
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.71 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025
8WF8
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BU of 8wf8 by Molmil
Cryo-EM structure of the PspCas13b-crRNA complex
Descriptor: MAGNESIUM ION, PspCas13b, crRNA
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025
8WF9
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BU of 8wf9 by Molmil
Cryo-EM structure of the PspCas13b-crRNA-target RNA complex (State 1)
Descriptor: MAGNESIUM ION, PspCas13b, crRNA, ...
Authors:Ishikawa, J, Kato, K, Yamashita, K, Nishizawa, T, Nishimasu, H.
Deposit date:2023-09-19
Release date:2025-03-19
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural insights into RNA-guided RNA editing by the Cas13b-ADAR2 complex.
Nat.Struct.Mol.Biol., 2025

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