Author results

1SIO
  • Download 1sio
  • View 1sio
Molmil generated image of 1sio
STRUCTURE OF KUMAMOLISIN-AS COMPLEXED WITH A COVALENTLY-BOUND INHIBITOR, ACIPF
Descriptor:kumamolisin-As, Ace-ILE-PRO-PHL peptide inhibitor, SULFATE ION, ...
Authors:Li, M., Wlodawer, A., Gustchina, A., Tsuruoka, N., Ashida, M., Minakata, H., Oyama, H., Oda, K., Nishino, T., Nakayama, T.
Deposit date:2004-03-01
Release date:2004-03-30
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
J.Biol.Chem., 279, 2004
1SIU
  • Download 1siu
  • View 1siu
Molmil generated image of 1siu
KUMAMOLISIN-AS E78H MUTANT
Descriptor:kumamolisin-As, SULFATE ION, CALCIUM ION
Authors:Li, M., Wlodawer, A., Gustchina, A., Tsuruoka, N., Ashida, M., Minakata, H., Oyama, H., Oda, K., Nishino, T., Nakayama, T.
Deposit date:2004-03-01
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
J.Biol.Chem., 279, 2004
1GT9
  • Download 1gt9
  • View 1gt9
Molmil generated image of 1gt9
HIGH RESOLUTION CRYSTAL STRUCTURE OF A THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP)
Descriptor:KUMAMOLYSIN, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-14
Release date:2002-06-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTG
  • Download 1gtg
  • View 1gtg
Molmil generated image of 1gtg
CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLYSIN (KSCP)
Descriptor:KUMAMOLYSIN, CALCIUM ION
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-15
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTJ
  • Download 1gtj
  • View 1gtj
Molmil generated image of 1gtj
CRYSTAL STRUCTURE OF THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP) - COMPLEX WITH AC-ILE-ALA-PHE-CHO
Descriptor:KUMAMOLYSIN, ALDEHYDE INHIBITOR, SULFATE ION, ...
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-15
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1GTL
  • Download 1gtl
  • View 1gtl
Molmil generated image of 1gtl
THE THERMOSTABLE SERINE-CARBOXYL TYPE PROTEINASE, KUMAMOLISIN (KSCP) - COMPLEX WITH AC-ILE-PRO-PHE-CHO
Descriptor:KUMAMOLYSIN, ALDEHYDE INHIBITOR, CALCIUM ION, ...
Authors:Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.
Deposit date:2002-01-16
Release date:2002-06-13
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The 1.4 A Crystal Structure of Kumamolysin. A Thermostable Serine-Carboxyl-Type Proteinase
Structure, 10, 2002
1NLU
  • Download 1nlu
  • View 1nlu
Molmil generated image of 1nlu
PSEUDOMONAS SEDOLISIN (SERINE-CARBOXYL PROTEINASE) COMPLEXED WITH TWO MOLECULES OF PSEUDO-IODOTYROSTATIN
Descriptor:SEDOLISIN, PSEUDO-IODOTYROSTATIN, CALCIUM ION
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Glodfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2003-01-07
Release date:2004-01-20
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Two inhibitor molecules bound in the active site of Pseudomonas sedolisin: a model for the bi-product complex following cleavage of a peptide substrate.
Biochem.Biophys.Res.Commun., 314, 2004
1S2B
  • Download 1s2b
  • View 1s2b
Molmil generated image of 1s2b
STRUCTURE OF SCP-B THE FIRST MEMBER OF THE EQOLISIN FAMILY OF PEPTIDASES TO HAVE ITS STRUCTURE DETERMINED
Descriptor:Scytalidopepsin B
Authors:Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.
Deposit date:2004-01-08
Release date:2004-04-27
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The molecular structure and catalytic mechanism of a novel carboxyl peptidase from Scytalidium lignicolum
Proc.Natl.Acad.Sci.USA, 101, 2004
1S2K
  • Download 1s2k
  • View 1s2k
Molmil generated image of 1s2k
STRUCTURE OF SCP-B A MEMBER OF THE EQOLISIN FAMILY OF PEPTIDASES IN A COMPLEX WITH A TRIPEPTIDE ALA-ILE-HIS
Descriptor:Scytalidopepsin B, Ala-Ile-His tripeptide, TYROSINE
Authors:Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., James, M.N.
Deposit date:2004-01-08
Release date:2004-04-27
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:The molecular structure and catalytic mechanism of a novel carboxyl peptidase from Scytalidium lignicolum
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1E
  • Download 1t1e
  • View 1t1e
Molmil generated image of 1t1e
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE INTACT PRO-KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
1T1G
  • Download 1t1g
  • View 1t1g
Molmil generated image of 1t1g
HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT E23A OF KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
1T1I
  • Download 1t1i
  • View 1t1i
Molmil generated image of 1t1i
HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT W129A OF KUMAMOLISIN, A SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP)
Descriptor:kumamolisin, CALCIUM ION, SULFATE ION
Authors:Comellas-Bigler, M., Maskos, K., Huber, R., Oyama, H., Oda, K., Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
6M8W
  • Download 6m8w
  • View 6m8w
Molmil generated image of 6m8w
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIAF
Descriptor:SEDOLISIN, AIAF PEPTIDE INHIBITOR, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-22
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M8Y
  • Download 6m8y
  • View 6m8y
Molmil generated image of 6m8y
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIPF
Descriptor:SEDOLISIN, AIPF PEPTIDE INHIBITOR, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-22
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9C
  • Download 6m9c
  • View 6m9c
Molmil generated image of 6m9c
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR PSEUDOTYROSTATIN
Descriptor:SEDOLISIN, Pseudotyrostatin, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9D
  • Download 6m9d
  • View 6m9d
Molmil generated image of 6m9d
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR CHYMOSTATIN
Descriptor:SEDOLISIN, Chymostatin A, CALCIUM ION
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
6M9F
  • Download 6m9f
  • View 6m9f
Molmil generated image of 6m9f
PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR TYROSTATIN
Descriptor:SEDOLISIN, Tyrostatin, CALCIUM ION, ...
Authors:Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.
Deposit date:2018-08-23
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
Biochemistry, 40, 2001
1ZVJ
  • Download 1zvj
  • View 1zvj
Molmil generated image of 1zvj
STRUCTURE OF KUMAMOLISIN-AS MUTANT, D164N
Descriptor:kumamolisin-As, CALCIUM ION, SULFATE ION
Authors:Li, M., Wlodawer, A., Gustchina, A., Nakayama, T.
Deposit date:2005-06-02
Release date:2006-05-23
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Processing, catalytic activity and crystal structures of kumamolisin-As with an engineered active site.
Febs J., 273, 2006
1ZVK
  • Download 1zvk
  • View 1zvk
Molmil generated image of 1zvk
STRUCTURE OF DOUBLE MUTANT, D164N, E78H OF KUMAMOLISIN-AS
Descriptor:kumamolisin-As, CALCIUM ION
Authors:Li, M., Wlodawer, A., Gustchina, A., Nakayama, T.
Deposit date:2005-06-02
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Processing, catalytic activity and crystal structures of kumamolisin-As with an engineered active site.
Febs J., 273, 2006
1SN7
  • Download 1sn7
  • View 1sn7
Molmil generated image of 1sn7
KUMAMOLISIN-AS, APOENZYME
Descriptor:kumamolisin-As, CALCIUM ION
Authors:Wlodawer, A., Li, M., Gustchina, A., Oda, K., Nishino, T.
Deposit date:2004-03-10
Release date:2004-06-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and biochemical investigations of kumamolisin-as, a serine-carboxyl peptidase with collagenase activity.
J.Biol.Chem., 279, 2004
2ECF
  • Download 2ecf
  • View 2ecf
Molmil generated image of 2ecf
CRYSTAL STRUCTURE OF DIPEPTIDYL AMINOPEPTIDASE IV FROM STENOTROPHOMONAS MALTOPHILIA
Descriptor:Dipeptidyl peptidase IV
Authors:Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-02-13
Release date:2008-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Dipeptidyl aminopeptidase IV from Stenotrophomonas maltophilia exhibits activity against a substrate containing a 4-hydroxyproline residue
J.Bacteriol., 190, 2008
2EEP
  • Download 2eep
  • View 2eep
Molmil generated image of 2eep
PROLYL TRIPEPTIDYL AMINOPEPTIDASE COMPLEXED WITH AN INHIBITOR
Descriptor:Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-02-16
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2Z3W
  • Download 2z3w
  • View 2z3w
Molmil generated image of 2z3w
PROLYL TRIPEPTIDYL AMINOPEPTIDASE MUTANT E636A
Descriptor:Dipeptidyl aminopeptidase IV, SULFATE ION, GLYCEROL
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-06-07
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2Z3Z
  • Download 2z3z
  • View 2z3z
Molmil generated image of 2z3z
PROLYL TRIPEPTIDYL AMINOPEPTIDASE MUTANT E636A COMPLEXD WITH AN INHIBITOR
Descriptor:Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID
Authors:Xu, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2007-06-09
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
3A6D
  • Download 3a6d
  • View 3a6d
Molmil generated image of 3a6d
CREATININASE COMPLEXED WITH 1-METHYLGUANIDINE
Descriptor:Creatinine amidohydrolase, MANGANESE (II) ION, ZINC ION, ...
Authors:Nakajima, Y., Yamashita, K., Ito, K., Yoshimoto, T.
Deposit date:2009-08-31
Release date:2010-02-09
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase
J.Mol.Biol., 396, 2010
<12>