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2E0W
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T391A PRECURSOR MUTANT PROTEIN OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0X
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI (MONOCLINIC FORM)
Descriptor:Gamma-glutamyltranspeptidase, CALCIUM ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0Y
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CRYSTAL STRUCTURE OF THE SAMARIUM DERIVATIVE OF MATURE GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, SAMARIUM (III) ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2ZTJ
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CRYSTAL STRUCTURE OF HOMOCITRATE SYNTHASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ALPHA-KETOGLUTARATE
Descriptor:Homocitrate synthase, 2-OXOGLUTARIC ACID, COPPER (II) ION
Authors:Okada, T., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2012-01-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZTK
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CRYSTAL STRUCTURE OF HOMOCITRATE SYNTHASE FROM THERMUS THERMOPHILUS COMPLEXED WITH HOMOCITRATE
Descriptor:Homocitrate synthase, 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION
Authors:Okada, T., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2012-01-25
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZYF
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CRYSTAL STRUCTURE OF HOMOCITRATE SYNTHASE FROM THERMUS THERMOPHILUS COMPLEXED WITH MAGNESUIM ION AND ALPHA-KETOGLUTARATE
Descriptor:Homocitrate synthase, 2-OXOGLUTARIC ACID, MAGNESIUM ION
Authors:Okada, T., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2009-01-20
Release date:2009-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus
J.Biol.Chem., 2009
3A9I
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CRYSTAL STRUCTURE OF HOMOCITRATE SYNTHASE FROM THERMUS THERMOPHILUS COMPLEXED WITH LYS
Descriptor:Homocitrate synthase, COBALT (II) ION, LYSINE
Authors:Okada, T., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2009-10-28
Release date:2009-12-22
Last modified:2012-01-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
1L9H
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN AT 2.6 ANGSTROMS RESOLUTION
Descriptor:rhodopsin, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E.M., Shichida, Y.
Deposit date:2002-03-23
Release date:2002-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 99, 2002
1U19
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN AT 2.2 ANGSTROMS RESOLUTION
Descriptor:Rhodopsin, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Okada, T., Sugihara, M., Bondar, A.N., Elstner, M., Entel, P., Buss, V.
Deposit date:2004-07-15
Release date:2004-10-12
Last modified:2015-03-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure
J.Mol.Biol., 342, 2004
2DBU
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DBW
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI ACYL-ENZYME INTERMEDIATE
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, GAMMA-L-GLUTAMIC ACID
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2013-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate
Proc.Natl.Acad.Sci.USA, 103, 2006
2DBX
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI COMPLEXED WITH L-GLUTAMATE
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, CALCIUM ION, ...
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DG5
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL TRANSPEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH HYDROLYZED GLUTATHIONE
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, CALCIUM ION, ...
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-03-08
Release date:2006-04-18
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1F88
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Descriptor:RHODOPSIN, N-ACETYL-D-GLUCOSAMINE, MERCURY (II) ION, ...
Authors:Okada, T., Palczewski, K., Stenkamp, R.E., Miyano, M.
Deposit date:2000-06-29
Release date:2000-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
1BM1
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CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor:BACTERIORHODOPSIN, RETINAL, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER
Authors:Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
2G87
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CRYSTALLOGRAPHIC MODEL OF BATHORHODOPSIN
Descriptor:Rhodopsin, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Nakamichi, H., Okada, T.
Deposit date:2006-03-02
Release date:2006-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic analysis of primary visual photochemistry
Angew.Chem.Int.Ed.Engl., 45, 2006
2PED
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CRYSTALLOGRAPHIC MODEL OF 9-CIS-RHODOPSIN
Descriptor:Rhodopsin, ALPHA-D-MANNOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Nakamichi, H., Okada, T.
Deposit date:2007-04-02
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography
Biophys.J., 92, 2007
3UON
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STRUCTURE OF THE HUMAN M2 MUSCARINIC ACETYLCHOLINE RECEPTOR BOUND TO AN ANTAGONIST
Descriptor:Human M2 muscarinic acetylcholine, receptor T4 lysozyme fusion protein, (3R)-1-azabicyclo[2.2.2]oct-3-yl hydroxy(diphenyl)acetate, ...
Authors:Haga, K., Kruse, A.C., Asada, H., Yurugi-Kobayashi, T., Shiroishi, M., Zhang, C., Weis, W.I., Okada, T., Kobilka, B.K., Haga, T., Kobayashi, T.
Deposit date:2011-11-16
Release date:2012-02-01
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist.
Nature, 482, 2012
1ED7
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor:CHITINASE A1
Authors:Ikegami, T., Okada, T., Hashimoto, M., Seino, S., Watanabe, T., Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1FR0
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SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.
Descriptor:ARCB
Authors:Ikegami, T., Okada, T., Ohki, I., Hirayama, J., Mizuno, T., Shirakawa, M.
Deposit date:2000-09-07
Release date:2001-03-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli.
Biochemistry, 40, 2001
1IQZ
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
2E39
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CRYSTAL STRUCTURE OF THE CN-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2E3A
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CRYSTAL STRUCTURE OF THE NO-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2E3B
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CRYSTAL STRUCTURE OF THE HA-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
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