Author results

1K1Z
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SOLUTION STRUCTURE OF N-TERMINAL SH3 DOMAIN MUTANT(P33G) OF MURINE VAV
Descriptor:vav
Authors:Ogura, K., Nagata, K., Horiuchi, M., Ebisui, E., Hasuda, T., Yuzawa, S., Nishida, M., Hatanaka, H., Inagaki, F.
Deposit date:2001-09-26
Release date:2001-10-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain
J.BIOMOL.NMR, 22, 2002
1WLP
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SOLUTION STRUCTURE OF THE P22PHOX-P47PHOX COMPLEX
Descriptor:Cytochrome b-245 light chain, Neutrophil cytosol factor 1
Authors:Ogura, K., Torikai, S., Saikawa, K., Yuzawa, S., Sumimoto, H., Inagaki, F.
Deposit date:2004-06-29
Release date:2005-10-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide
J.Biol.Chem., 281, 2006
2LHH
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SOLUTION STRUCTURE OF CA2+-BOUND YCAM
Descriptor:Calmodulin, CALCIUM ION
Authors:Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2LHI
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SOLUTION STRUCTURE OF CA2+/CNA1 PEPTIDE-BOUND YCAM
Descriptor:Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1, CALCIUM ION
Authors:Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.
Deposit date:2011-08-10
Release date:2012-08-29
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.
Genes Cells, 17, 2012
2Z42
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' FROM SPHINGOMONAS SP. A1
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2007-06-12
Release date:2008-05-27
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZA9
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CRYSTAL STRUCTURE OF ALGINATE LYASE A1-II' N141C/N199C
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAA
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' H191N/Y284F IN COMPLEX WITH SUBSTRATE (GGMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAB
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN CMPLEX WITH PRODUCT (GGG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN COMPLEX WITH PRODUCT (MMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
3A0N
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CRYSTAL STRUCTURE OF D-GLUCURONIC ACID-BOUND ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-23
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3GNE
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CRYSTAL STRUCTURE OF ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, CITRATE ANION, GLYCEROL
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-17
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3IM0
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CRYSTAL STRUCTURE OF CHLORELLA VIRUS VAL-1 SOAKED IN 200MM D-GLUCURONIC ACID, 10% PEG-3350, AND 200MM GLYCINE-NAOH (PH 10.0)
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-08-08
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
1QG1
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GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN COMPLEXED WITH AN SHC-DERIVED PEPTIDE
Descriptor:PROTEIN (GROWTH FACTOR RECEPTOR BINDING PROTEIN), PROTEIN (SHC-DERIVED PEPTIDE)
Authors:Ogura, K.
Deposit date:1999-04-19
Release date:1999-04-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the SH2 domain of Grb2 complexed with the Shc-derived phosphotyrosine-containing peptide.
J.Mol.Biol., 289, 1999
1X0N
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NMR STRUCTURE OF GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN COMPLEXED WITH THE INHIBITOR
Descriptor:Growth factor receptor-bound protein 2, 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)-14-(1-NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC ACID
Authors:Ogura, K., Shiga, T., Yuzawa, S., Yokochi, M., Burke, T.R., Inagaki, F.
Deposit date:2005-03-24
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
To be Published
2KFJ
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SOLUTION STRUCTURE OF THE LOOP DELETION MUTANT OF PB1 DOMAIN OF CDC24P
Descriptor:Cell division control protein 24
Authors:Ogura, K., Tandai, T., Yoshinaga, S., Kobashigawa, Y., Kumeta, H., Inagaki, F.
Deposit date:2009-02-22
Release date:2009-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
2YZ0
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SOLUTION STRUCTURE OF RWD/GI DOMAIN OF SACCHAROMYCES CEREVISIAE GCN2
Descriptor:Serine/threonine-protein kinase GCN2
Authors:Ogura, K., Torikai, S., Kumeta, H., Inagaki, F.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
to be published
2KFK
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SOLUTION STRUCTURE OF BEM1P PB1 DOMAIN COMPLEXED WITH CDC24P PB1 DOMAIN
Descriptor:Bud emergence protein 1, Cell division control protein 24
Authors:Kobashigawa, Y., Yoshinaga, S., Tandai, T., Ogura, K., Inagaki, F.
Deposit date:2009-02-23
Release date:2009-10-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
1IO6
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GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (GRB2) C-TERMINAL SH3 DOMAIN COMPLEXED WITH A LIGAND PEPTIDE (NMR, MINIMIZED MEAN STRUCTURE)
Descriptor:GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, A LIGAND PEPTIDE
Authors:Kawasaki, M., Ogura, K., Hatanaka, H., Inagaki, F.
Deposit date:2001-01-25
Release date:2001-02-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the C-Terminal SH3 Domain of Grb2 Complexed with a Ligand Peptide: A Ligand Exchange Model of the SH3 Domain
To be Published
1WRF
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REFINED SOLUTION STRUCTURE OF DER F 2, THE MAJOR MITE ALLERGEN FROM DERMATOPHAGOIDES FARINAE
Descriptor:Mite group 2 allergen Der f 2
Authors:Ichikawa, S., Takai, T., Inoue, T., Yuuki, T., Okumura, Y., Ogura, K., Inagaki, F., Hatanaka, H.
Deposit date:2004-10-15
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Study on the Major Mite Allergen Der f 2: Its Refined Tertiary Structure, Epitopes for Monoclonal Antibodies and Characteristics Shared by ML Protein Group Members
J.Biochem.(Tokyo), 137, 2005
2JPE
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FHA DOMAIN OF NIPP1
Descriptor:Nuclear inhibitor of protein phosphatase 1
Authors:Kumeta, H., Ogura, K., Fujioka, Y., Tanuma, N., Kikuchi, K., Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-15
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:The NMR structure of the NIPP1 FHA domain.
J.Biomol.Nmr, 40, 2008
1AK6
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DESTRIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:DESTRIN
Authors:Hatanaka, H., Moriyama, K., Ogura, K., Ichikawa, S., Yahara, I., Inagaki, F.
Deposit date:1997-05-29
Release date:1997-11-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
1AK7
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DESTRIN, NMR, 20 STRUCTURES
Descriptor:DESTRIN
Authors:Hatanaka, H., Moriyama, K., Ogura, K., Ichikawa, S., Yahara, I., Inagaki, F.
Deposit date:1997-05-29
Release date:1997-10-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Tertiary structure of destrin and structural similarity between two actin-regulating protein families.
Cell(Cambridge,Mass.), 85, 1996
1GCP
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CRYSTAL STRUCTURE OF VAV SH3 DOMAIN
Descriptor:VAV PROTO-ONCOGENE
Authors:Nishida, M., Nagata, K., Hachimori, Y., Ogura, K., Inagaki, F.
Deposit date:2000-08-08
Release date:2001-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
1GCQ
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CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS
Descriptor:GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, VAV PROTO-ONCOGENE, (4R)-2-METHYLPENTANE-2,4-DIOL
Authors:Nishida, M., Nagata, K., Hachimori, Y., Ogura, K., Inagaki, F.
Deposit date:2000-08-08
Release date:2001-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
2CWS
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CRYSTAL STRUCTURE AT 1.0 A OF ALGINATE LYASE A1-II', A MEMBER OF POLYSACCHARIDE LYASE FAMILY-7
Descriptor:alginate lyase A1-II', SULFATE ION, GLYCEROL
Authors:Yamasaki, M., Ogura, K., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2005-06-25
Release date:2005-11-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:A Structural Basis for Depolymerization of Alginate by Polysaccharide Lyase Family-7
J.Mol.Biol., 352, 2005
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