Author results

5XND
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SOLUTION STRUCTURE OF THE MAJOR FISH ALLERGEN PARVALBUMIN SCO J 1 DERIVED FROM THE PACIFIC MACKEREL
Descriptor:Parvalbumin beta, CALCIUM ION
Authors:Kumeta, H., Nakayama, H., Ogura, K.
Deposit date:2017-05-22
Release date:2017-12-27
Method:SOLUTION NMR
Cite:Solution structure of the major fish allergen parvalbumin Sco j 1 derived from the Pacific mackerel
Sci Rep, 7, 2017
4F13
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ALGINATE LYASE A1-III Y246F COMPLEXED WITH TETRASACCHARIDE
Descriptor:Alginate lyase, 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid, beta-D-mannuronic acid
Authors:Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.
Deposit date:2012-05-06
Release date:2012-06-27
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F10
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ALGINATE LYASE A1-III H192A COMPLEXED WITH TETRASACCHARIDE
Descriptor:Alginate lyase, 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid, ALPHA-L-GULURONATE, ...
Authors:Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.
Deposit date:2012-05-05
Release date:2012-06-27
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4E1Y
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ALGINATE LYASE A1-III H192A APO FORM
Descriptor:Alginate lyase
Authors:Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.
Deposit date:2012-03-07
Release date:2012-04-11
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
3VH4
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CRYSTAL STRUCTURE OF ATG7CTD-ATG8-MGATP COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, Autophagy-related protein 8, ZINC ION, ...
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH3
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CRYSTAL STRUCTURE OF ATG7CTD-ATG8 COMPLEX
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, Autophagy-related protein 8, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH2
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-613)
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VH1
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CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-595)
Descriptor:Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N., Satoo, K., Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3IM0
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CRYSTAL STRUCTURE OF CHLORELLA VIRUS VAL-1 SOAKED IN 200MM D-GLUCURONIC ACID, 10% PEG-3350, AND 200MM GLYCINE-NAOH (PH 10.0)
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-08-08
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3GNE
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CRYSTAL STRUCTURE OF ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, CITRATE ANION, GLYCEROL
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-17
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3A0N
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CRYSTAL STRUCTURE OF D-GLUCURONIC ACID-BOUND ALGINATE LYASE VAL-1 FROM CHLORELLA VIRUS
Descriptor:VAL-1, BETA-D-GLUCOPYRANURONIC ACID
Authors:Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-23
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2ZAC
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN COMPLEX WITH PRODUCT (MMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAB
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' Y284F IN CMPLEX WITH PRODUCT (GGG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAA
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' H191N/Y284F IN COMPLEX WITH SUBSTRATE (GGMG)
Descriptor:Alginate lyase, ALPHA-L-GULURONATE, beta-D-mannuronic acid, ...
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZA9
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CRYSTAL STRUCTURE OF ALGINATE LYASE A1-II' N141C/N199C
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-02
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2Z42
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CRYSTAL STRUCTURE OF FAMILY 7 ALGINATE LYASE A1-II' FROM SPHINGOMONAS SP. A1
Descriptor:Alginate lyase, SULFATE ION
Authors:Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2007-06-12
Release date:2008-05-27
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2YZ0
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SOLUTION STRUCTURE OF RWD/GI DOMAIN OF SACCHAROMYCES CEREVISIAE GCN2
Descriptor:Serine/threonine-protein kinase GCN2
Authors:Ogura, K., Torikai, S., Kumeta, H., Inagaki, F.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of RWD/GI domain of Saccharomyces cerevisiae GCN2
to be published
2RSE
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NMR STRUCTURE OF FKBP12-MTOR FRB DOMAIN-RAPAMYCIN COMPLEX STRUCTURE DETERMINED BASED ON PCS
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1A, Serine/threonine-protein kinase mTOR, TERBIUM(III) ION
Authors:Kobashigawa, Y., Ushio, M., Saio, T., Inagaki, F.
Deposit date:2012-01-25
Release date:2012-05-30
Method:SOLUTION NMR
Cite:Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.
J.Biomol.Nmr, 53, 2012
2RQW
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SOLUTION STRUCTURE OF BEM1P SH3CI DOMAIN COMPLEXED WITH STE20P-PRR PEPTIDE
Descriptor:Bud emergence protein 1, 24-meric peptide from Serine/threonine-protein kinase STE20
Authors:Takaku, T., Ogura, K., Inagaki, F.
Deposit date:2009-12-21
Release date:2010-04-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a novel Cdc42-binding module of Bem1 and its interaction with Ste20 and Cdc42
J.Biol.Chem., 285, 2010
2RQV
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SOLUTION STRUCTURE OF SH3CI DOMAIN OF BEM1P
Descriptor:Bud emergence protein 1
Authors:Takaku, T., Ogura, K., Inagaki, F.
Deposit date:2009-12-21
Release date:2010-04-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a novel Cdc42-binding module of Bem1 and its interaction with Ste20 and Cdc42
J.Biol.Chem., 285, 2010
2RQE
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SOLUTION STRUCTURE OF THE SILKWORM BGRP/GNBP3 N-TERMINAL DOMAIN REVEALS THE MECHANISM FOR B-1,3-GLUCAN SPECIFIC RECOGNITION
Descriptor:Beta-1,3-glucan-binding protein
Authors:Takahasi, K., Ochiai, M., Horiuchi, M., Kumeta, H., Ogura, K., Ashida, M., Inagaki, F.
Deposit date:2009-04-22
Release date:2009-06-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.
Proc.Natl.Acad.Sci.USA, 106, 2009
2RQB
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SOLUTION STRUCTURE OF MDA5 CTD
Descriptor:Interferon-induced helicase C domain-containing protein 1, ZINC ION
Authors:Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.
Deposit date:2009-03-17
Release date:2009-05-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
J.Biol.Chem., 284, 2009
2RQA
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SOLUTION STRUCTURE OF LGP2 CTD
Descriptor:ATP-dependent RNA helicase DHX58, ZINC ION
Authors:Takahasi, K., Kumeta, H., Tsuduki, N., Narita, R., Shigemoto, T., Hirai, R., Yoneyama, M., Horiuchi, M., Ogura, K., Fujita, T., Fuyuhiko, I.
Deposit date:2009-03-17
Release date:2009-05-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS
J.Biol.Chem., 284, 2009
2RPV
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SOLUTION STRUCTURE OF GB1 WITH LBT PROBE
Descriptor:Immunoglobulin G-binding protein G, LANTHANUM (III) ION
Authors:Saio, T., Ogura, K., Yokochi, M., Kobashigawa, Y., Inagaki, F.
Deposit date:2008-10-28
Release date:2009-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect
J.Biomol.Nmr, 44, 2009
2M63
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THE PROTEASE-RESISTANT N-TERMINAL DOMAIN OF TIR-DOMAIN CONTAINING ADAPTOR MOLECULE-1, TICAM-1
Descriptor:TIR domain-containing adapter molecule 1
Authors:Kumeta, H., Enokizono, Y., Sakakibara, H., Ogura, K., Matsumoto, M., Seya, T., Inagaki, F.
Deposit date:2013-03-20
Release date:2014-03-05
Method:SOLUTION NMR
Cite:The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1
J.Biomol.Nmr, 2014
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