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1RMS
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BU of 1rms by Molmil
CRYSTAL STRUCTURES OF RIBONUCLEASE MS COMPLEXED WITH 3'-GUANYLIC ACID A GP*C ANALOGUE, 2'-DEOXY-2'-FLUOROGUANYLYL-3',5'-CYTIDINE
Descriptor: GUANOSINE-3'-MONOPHOSPHATE, RIBONUCLEASE MS
Authors:Nonaka, T, Mitsui, Y, Nakamura, K.T.
Deposit date:1991-12-02
Release date:1992-07-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of ribonuclease Ms (as a ribonuclease T1 homologue) complexed with a guanylyl-3',5'-cytidine analogue.
Biochemistry, 32, 1993
1RDS
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BU of 1rds by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE MS (AS RIBONUCLEASE T1 HOMOLOGUE) COMPLEXED WITH A GUANYLYL-3',5'-CYTIDINE ANALOGUE
Descriptor: 2'-FLUOROGUANYLYL-(3'-5')-PHOSPHOCYTIDINE, RIBONUCLEASE MS
Authors:Nonaka, T, Nakamura, K.T, Mitsui, Y.
Deposit date:1993-05-14
Release date:1993-10-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ribonuclease Ms (as a ribonuclease T1 homologue) complexed with a guanylyl-3',5'-cytidine analogue.
Biochemistry, 32, 1993
2CVO
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BU of 2cvo by Molmil
Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa)
Descriptor: putative Semialdehyde dehydrogenase
Authors:Nonaka, T, Kita, A, Miura-Ohnuma, J, Katoh, E, Inagaki, N, Yamazaki, T, Miki, K.
Deposit date:2005-06-10
Release date:2005-12-06
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa)
Proteins, 61, 2005
1UD3
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BU of 1ud3 by Molmil
Crystal structure of AmyK38 N289H mutant
Descriptor: SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD8
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BU of 1ud8 by Molmil
Crystal structure of AmyK38 with lithium ion
Descriptor: SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD4
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BU of 1ud4 by Molmil
Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution)
Descriptor: SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD2
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BU of 1ud2 by Molmil
Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38)
Descriptor: GLYCEROL, SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1UD5
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BU of 1ud5 by Molmil
Crystal structure of AmyK38 with rubidium ion
Descriptor: RUBIDIUM ION, SODIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
1WMF
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BU of 1wmf by Molmil
Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (oxidized form, 1.73 angstrom)
Descriptor: 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ...
Authors:Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
Deposit date:2004-07-08
Release date:2004-09-14
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1WME
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BU of 1wme by Molmil
Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.50 angstrom, 293 K)
Descriptor: CALCIUM ION, protease
Authors:Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
Deposit date:2004-07-08
Release date:2004-09-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1WMD
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BU of 1wmd by Molmil
Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)
Descriptor: 1,4-DIETHYLENE DIOXIDE, CALCIUM ION, GLYCEROL, ...
Authors:Nonaka, T, Fujihashi, M, Kita, A, Saeki, K, Ito, S, Horikoshi, K, Miki, K.
Deposit date:2004-07-08
Release date:2004-09-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The Crystal Structure of an Oxidatively Stable Subtilisin-like Alkaline Serine Protease, KP-43, with a C-terminal {beta}-Barrel Domain
J.Biol.Chem., 279, 2004
1UD6
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BU of 1ud6 by Molmil
Crystal structure of AmyK38 with potassium ion
Descriptor: POTASSIUM ION, amylase
Authors:Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K.
Deposit date:2003-04-28
Release date:2003-07-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites
J.Biol.Chem., 278, 2003
6HFB
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BU of 6hfb by Molmil
Outward-facing conformation of a multidrug resistance MATE family transporter of the MOP superfamily.
Descriptor: CESIUM ION, Uncharacterized protein
Authors:Nonaka, T, Zakrzewska, S, Safarian, S, Michel, H.
Deposit date:2018-08-21
Release date:2019-06-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.495 Å)
Cite:Inward-facing conformation of a multidrug resistance MATE family transporter.
Proc.Natl.Acad.Sci.USA, 116, 2019
3IWR
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BU of 3iwr by Molmil
Crystal structure of class I chitinase from Oryza sativa L. japonica
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Chitinase
Authors:Kezuka, Y, Watanabe, T, Nonaka, T.
Deposit date:2009-09-03
Release date:2010-04-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering.
Proteins, 78, 2010
5XEO
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BU of 5xeo by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum
Descriptor: ACETATE ION, CALCIUM ION, Cysteine synthase, ...
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2017-04-05
Release date:2018-04-11
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum
To Be Published
5XEN
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BU of 5xen by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-serine-PLP Schiff base
Descriptor: ACETATE ION, CALCIUM ION, Cysteine synthase, ...
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2017-04-05
Release date:2018-04-11
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-serine-PLP Schiff base
To Be Published
5XEM
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BU of 5xem by Molmil
Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-lanthionine-PLP Schiff base
Descriptor: (2R)-2-azanyl-3-[(2R)-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-propanoic acid, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 2-(2-METHOXYETHOXY)ETHANOL, ...
Authors:Kezuka, Y, Yoshida, Y, Nonaka, T.
Deposit date:2017-04-05
Release date:2018-04-11
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium nucleatum in complex with L-lanthionine-PLP Schiff base
To Be Published
1ITX
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BU of 1itx by Molmil
Catalytic Domain of Chitinase A1 from Bacillus circulans WL-12
Descriptor: GLYCEROL, Glycosyl Hydrolase
Authors:Iwahori, F, Matsumoto, T, Watanabe, T, Nonaka, T.
Deposit date:2002-02-13
Release date:2002-03-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Three-dimensional structure of the catalytic domain of chitinase A1 from Bacillus circulans WL-12 at a very high resolution
PROC.JPN.ACAD.,SER.B, 75, 1999
1AHH
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BU of 1ahh by Molmil
7 ALPHA-HYDROXYSTEROID DEHYDROGENASE COMPLEXED WITH NAD+
Descriptor: 7 ALPHA-HYDROXYSTEROID DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Tanaka, N, Nonaka, T, Mitsui, Y.
Deposit date:1995-08-25
Release date:1996-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the binary and ternary complexes of 7 alpha-hydroxysteroid dehydrogenase from Escherichia coli.
Biochemistry, 35, 1996
1AHI
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BU of 1ahi by Molmil
7 ALPHA-HYDROXYSTEROID DEHYDROGENASE COMPLEXED WITH NADH AND 7-OXO GLYCOCHENODEOXYCHOLIC ACID
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 7 ALPHA-HYDROXYSTEROID DEHYDROGENASE, GLYCOCHENODEOXYCHOLIC ACID
Authors:Tanaka, N, Nonaka, T, Mitsui, Y.
Deposit date:1995-08-25
Release date:1996-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the binary and ternary complexes of 7 alpha-hydroxysteroid dehydrogenase from Escherichia coli.
Biochemistry, 35, 1996
1KWC
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BU of 1kwc by Molmil
The His145Ala mutant of 2,3-dihydroxybiphenyl dioxygenase in complex with 2,3-dihydroxybiphenyl
Descriptor: 2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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BU of 1kw9 by Molmil
Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, FE (II) ION
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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BU of 1kwb by Molmil
Crystal structure of the His145Ala mutant of 2,3-dihydroxybipheny dioxygenase (BphC)
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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BU of 1kw8 by Molmil
Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, FE (II) ION, ...
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
4MLB
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BU of 4mlb by Molmil
Reverse polarity of binding pocket suggests different function of a MOP superfamily transporter from Pyrococcus furiosus Vc1 (DSM3638)
Descriptor: CHLORIDE ION, PENTAETHYLENE GLYCOL MONODECYL ETHER, PF0708
Authors:Malviya, V.N, Nonaka, T, Muenke, C, Koepke, J, Michel, H.
Deposit date:2013-09-06
Release date:2013-09-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.349 Å)
Cite:Inward-facing conformation of a multidrug resistance MATE family transporter.
Proc.Natl.Acad.Sci.USA, 116, 2019

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