4V8K
| Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form | Descriptor: | BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ... | Authors: | Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K. | Deposit date: | 2013-11-22 | Release date: | 2014-07-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.006 Å) | Cite: | Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature, 508, 2014
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6A2J
| Crystal structure of heme A synthase from Bacillus subtilis | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ... | Authors: | Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K. | Deposit date: | 2018-06-12 | Release date: | 2018-11-21 | Last modified: | 2018-12-12 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of heme A synthase fromBacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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3WMM
| Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form | Descriptor: | (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ... | Authors: | Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K. | Deposit date: | 2013-11-22 | Release date: | 2014-04-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.008 Å) | Cite: | Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature, 508, 2014
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6IED
| Crystal structure of heme A synthase from Bacillus subtilis | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ... | Authors: | Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K. | Deposit date: | 2018-09-13 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal structure of heme A synthase fromBacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5DHE
| Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1 | Descriptor: | Chitinase, GLYCEROL | Authors: | Niwa, S, Hibi, M, Takeda, K, Miki, K. | Deposit date: | 2015-08-30 | Release date: | 2016-02-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett., 590, 2016
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5WQQ
| High resolution structure of high-potential iron-sulfur protein in the oxidized state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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5WQR
| High resolution structure of high-potential iron-sulfur protein in the reduced state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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5DHD
| Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1 | Descriptor: | 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Chitinase, SULFATE ION | Authors: | Hibi, M, Niwa, S, Takeda, K, Miki, K. | Deposit date: | 2015-08-30 | Release date: | 2016-02-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett., 590, 2016
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7XJC
| Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJE
| Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-01 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin Commun Biol, 6, 2023
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7XJD
| Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation | Descriptor: | 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Taguchi, S, Niwa, S, Takeda, K. | Deposit date: | 2022-04-16 | Release date: | 2023-03-22 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin. Commun Biol, 6, 2023
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7YRA
| Crystal structure of [2Fe-2S]-TtPetA | Descriptor: | CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, ... | Authors: | Tsutsumi, E, Niwa, S, Takeda, K. | Deposit date: | 2022-08-09 | Release date: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
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7YR9
| Crystal structure of the immature form of TtPetA | Descriptor: | CHLORIDE ION, GLYCEROL, SULFATE ION, ... | Authors: | Tsutsumi, E, Niwa, S, Takeda, K. | Deposit date: | 2022-08-09 | Release date: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structure of a putative immature form of a Rieske-type iron-sulfur protein in complex with zinc chloride. Commun Chem, 6, 2023
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5X1D
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5X1A
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5X1C
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7X4N
| Crystal Structure of C. elegans kinesin-4 KLP-12 complexed with tubulin and DARPin | Descriptor: | DARPin, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ... | Authors: | Taguchi, S, Imasaki, T, Saijo-Hamano, Y, Sakai, N, Nitta, R. | Deposit date: | 2022-03-03 | Release date: | 2022-09-21 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.88 Å) | Cite: | Structural model of microtubule dynamics inhibition by kinesin-4 from the crystal structure of KLP-12 -tubulin complex. Elife, 11, 2022
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2Z5C
| Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly | Descriptor: | Proteasome component PUP2, Protein YPL144W, Uncharacterized protein YLR021W | Authors: | Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K. | Deposit date: | 2007-07-03 | Release date: | 2008-01-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
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2Z5B
| Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly | Descriptor: | Protein YPL144W, Uncharacterized protein YLR021W | Authors: | Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K. | Deposit date: | 2007-07-03 | Release date: | 2008-01-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.96 Å) | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
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2Z5E
| Crystal Structure of Proteasome Assembling Chaperone 3 | Descriptor: | Proteasome Assembling Chaperone 3 | Authors: | Okamoto, K, Kurimoto, E, Sakata, E, Suzuki, A, Yamane, T, Hirano, Y, Murata, S, Tanaka, K, Kato, K. | Deposit date: | 2007-07-06 | Release date: | 2008-02-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes Nat.Struct.Mol.Biol., 15, 2008
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