Author results

7JR4
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SARS-COV-2 3CL PROTEASE WITH ALTERNATIVE CONFORMATION OF THE ACTIVE SITE PROMOTED BY METHYLENE-BRIDGED CYSTEINE AND LYSINE RESIDUES
Descriptor:3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Nascimento, A.F.Z., de Oliveira, R.R., Zeri, A.C.M., Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues
To be Published
6WJO
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CRYSTAL STRUCTURE OF WILD-TYPE ARGININE REPRESSOR FROM THE PATHOGENIC BACTERIUM CORYNEBACTERIUM PSEUDOTUBERCULOSIS BOUND TO TYROSINE
Descriptor:Arginine repressor, TYROSINE, SULFATE ION, ...
Authors:Nascimento, A.F.Z., Hernandez-Gonzalez, J.E., de Morais, M.A.B., Murakami, M.T., Carareto, C.M.A., Arni, R.K., Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
6WJP
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CRYSTAL STRUCTURE OF ARGININE REPRESSOR P115Q MUTANT FROM THE PATHOGENIC BACTERIUM CORYNEBACTERIUM PSEUDOTUBERCULOSIS BOUND TO ARGININE
Descriptor:Arginine repressor, ARGININE, ACETATE ION, ...
Authors:Nascimento, A.F.Z., Hernandez-Gonzalez, J.E., de Morais, M.A.B., Murakami, M.T., Carareto, C.M.A., Arni, R.K., Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
5U4Z
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CRYSTAL STRUCTURE OF CITRUS MAF1 IN SPACE GROUP P 31 2 1
Descriptor:Repressor of RNA polymerase III transcription, SULFATE ION
Authors:Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.
Deposit date:2016-12-06
Release date:2017-07-19
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of citrus MAF1 in space group P 31 2 1
To Be Published
5U50
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CRYSTAL STRUCTURE OF CITRUS MAF1 IN SPACE GROUP C 2 2 21
Descriptor:Repressor of RNA polymerase III transcription
Authors:Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.
Deposit date:2016-12-06
Release date:2017-07-19
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystal structure of citrus MAF1 in space group C 2 2 21
To Be Published
5VOK
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CRYSTAL STRUCTURE OF THE C7ORF59-HBXIP DIMER
Descriptor:Ragulator complex protein LAMTOR5, Ragulator complex protein LAMTOR4
Authors:Rasheed, N., Nascimento, A.F.Z., Bar-Peled, L., Shen, K., Sabatini, D.M., Aparicio, R., Smetana, J.H.C.
Deposit date:2017-05-03
Release date:2018-05-23
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:C7orf59/Lamtor4 phosphorylation and structural flexibility modulate Ragulator assembly.
Febs Open Bio, 2019
6B7U
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STRUCTURE OF HEN EGG-WHITE LYSOZYME WITHOUT HIGH-PRESSURE PRE-TREATMENT
Descriptor:Lysozyme C, CHLORIDE ION, SODIUM ION, ...
Authors:Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6B7V
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STRUCTURE OF HEN EGG-WHITE LYSOZYME PRE-TREATED WITH HIGH-PRESSURE HOMOGENIZATION AT 120 MPA
Descriptor:Lysozyme C, CHLORIDE ION, SODIUM ION, ...
Authors:Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6B7W
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STRUCTURE OF HEN EGG-WHITE LYSOZYME PRE-TREATED WITH HIGH PRESSURE (600 MPA) UNDER ISOBARIC CONDITION
Descriptor:Lysozyme C, CHLORIDE ION, SODIUM ION, ...
Authors:Morais, M.A.B., Nascimento, A.F.Z., Tominaga, C.Y., Cristianini, M., Tribst, A.A.L., Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6DDN
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THE SULFATE-BINDING PROTEIN SUBI FROM MYCOBACTERIUM TUBERCULOSIS H37RV
Descriptor:Probable sulfate-binding lipoprotein SubI, SULFATE ION, ACETATE ION, ...
Authors:Meza, A.N., Balan, A., Nascimento, A.F.Z.
Deposit date:2018-05-10
Release date:2019-05-15
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:Structural characterization of SubI, a new target for Mycobacterium tuberculosis
To Be Published
7JR3
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SARS-COV-2 3CL PROTEASE CRYSTALLIZED UNDER REDUCING CONDITIONS
Descriptor:3C-like proteinase
Authors:de Oliveira, R.R., Nascimento, A.F.Z., Zeri, A.C.M., Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease crystallized under reducing conditions.
To be Published
7KFI
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SARS-COV-2 MAIN PROTEASE IMMATURE FORM - APO STRUCTURE
Descriptor:Main protease, DIMETHYL SULFOXIDE, DI(HYDROXYETHYL)ETHER
Authors:Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Oliva, G., Godoy, A.S.
Deposit date:2020-10-14
Release date:2020-10-28
Last modified:2020-11-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:SARS-CoV-2 Main protease immature form - apo structure
To Be Published
7KFJ
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SARS-COV-2 MAIN PROTEASE IMMATURE FORM - FRAGMENT BBV-136614527
Descriptor:Main protease, DIMETHYL SULFOXIDE, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Oliva, G., Godoy, A.S.
Deposit date:2020-10-14
Release date:2020-10-28
Last modified:2020-11-04
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:SARS-CoV-2 Main protease immature form - fragment BBV-136614527
To Be Published
7KPH
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SARS-COV-2 MAIN PROTEASE IN MATURE FORM
Descriptor:3C-like proteinase
Authors:Noske, G.D., Nakamura, A.M., Gawriljuk, V.O., Lima, G.M.A., Zeri, A.C.M., Nascimento, A.F.Z., Oliva, G., Godoy, A.S.
Deposit date:2020-11-11
Release date:2020-11-18
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:SARS-CoV-2 Main Protease in mature form
To Be Published
4J5L
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VA
Descriptor:Unconventional myosin-Va, SULFATE ION
Authors:Nascimento, A.F.Z., Trindade, D.M., Tonoli, C.C.C., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4J5M
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VB
Descriptor:Unconventional myosin-Vb, NITRATE ION
Authors:Nascimento, A.F.Z., Trindade, D.M., Mahajan, P., Berridge, G., Krojer, T., Vollmar, M., Tonoli, C.C.C., Assis, L.H.P., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-02-08
Release date:2013-10-09
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4KC7
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CRYSTAL STRUCTURE OF ENDO-1,5-ALPHA-L-ARABINANASE FROM THERMOTOGA PETROPHILA RKU-1
Descriptor:Glycoside hydrolase, family 43, DI(HYDROXYETHYL)ETHER, ...
Authors:Nascimento, A.F.Z., Polo, C.C., Santos, C.R., Costa, M.C.M.F., Mesa, A.N., Prade, R.A., Ruller, R., Squina, F.M., Murakami, M.T.
Deposit date:2013-04-24
Release date:2014-02-05
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
4KC8
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CRYSTAL STRUCTURE OF ENDO-1,5-ALPHA-L-ARABINANASE FROM THERMOTOGA PETROPHILA RKU-1 IN COMPLEX WITH TRIS
Descriptor:Glycoside hydrolase, family 43, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Nascimento, A.F.Z., Polo, C.C., Santos, C.R., Costa, M.C.M.F., Mesa, A.N., Prade, R.A., Ruller, R., Squina, F.M., Murakami, M.T.
Deposit date:2013-04-24
Release date:2014-02-05
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
4L8T
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STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VC
Descriptor:Unconventional myosin-Vc
Authors:Nascimento, A.F.Z., Tonoli, C.C.C., Trindade, D.M., Assis, L.H.P., Mahajan, P., Berridge, G., Krojer, T., Burgess-Brown, N., von Delft, F., Murakami, M.T.
Deposit date:2013-06-17
Release date:2013-10-09
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors.
J.Biol.Chem., 288, 2013
4KCA
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CRYSTAL STRUCTURE OF ENDO-1,5-ALPHA-L-ARABINANASE FROM A BOVINE RUMINAL METAGENOMIC LIBRARY
Descriptor:Endo-1,5-alpha-L-arabinanase, IODIDE ION, GLYCEROL, ...
Authors:Santos, C.R., Polo, C.C., Costa, M.C.M.F., Nascimento, A.F.Z., Wong, D.W.S., Murakami, M.T.
Deposit date:2013-04-24
Release date:2014-02-05
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
4KCB
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CRYSTAL STRUCTURE OF EXO-1,5-ALPHA-L-ARABINANASE FROM BOVINE RUMINAL METAGENOMIC LIBRARY
Descriptor:Arabinan endo-1,5-alpha-L-arabinosidase, PHOSPHATE ION
Authors:Santos, C.R., Polo, C.C., Costa, M.C.M.F., Nascimento, A.F.Z., Wong, D.W.S., Murakami, M.T.
Deposit date:2013-04-24
Release date:2014-02-05
Last modified:2014-04-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.
J.Biol.Chem., 289, 2014
171588
PDB entries from 2020-11-25