Author results

1J2V
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CRYSTAL STRUCTURE OF CUTA1 FROM PYROCOCCUS HORIKOSHII
Descriptor:102AA long hypothetical periplasmic divalent cation tolerance protein CUTA
Authors:Tanaka, Y., Sakai, N., Yasutake, Y., Yao, M., Tsumoto, K., Kumagai, I., Tanaka, I.
Deposit date:2003-01-11
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1UKU
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA1 COMPLEXED WITH CU2+
Descriptor:periplasmic divalent cation tolerance protein CutA, COPPER (II) ION
Authors:Tanaka, Y., Yasutake, Y., Yao, M., Sakai, N., Tanaka, I., Tsumoto, K., Kumagai, I.
Deposit date:2003-09-01
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA.
Febs Lett., 556, 2004
1V61
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SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF ALPHA-PIX
Descriptor:Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
Authors:Nakanishi, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-26
Release date:2004-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Pleckstrin Homology Domain of alpha-Pix
To be Published
1UMJ
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII CUTA IN THE PRESENCE OF 3M GUANIDINE HYDROCHLORIDE
Descriptor:periplasmic divalent cation tolerance protein CutA, GUANIDINE
Authors:Tanaka, Y., Tsumoto, K., Yasutake, Y., Sakai, N., Yao, M., Tanaka, I., Kumagai, I.
Deposit date:2003-10-02
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride
Biochem.Biophys.Res.Commun., 323, 2004
1WFY
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SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF MOUSE RGS14
Descriptor:regulator of G-protein signaling 14; rap1/rap2 interacting protein
Authors:Nakanishi, T., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2004-11-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the Ras-binding domain of mouse RGS14
To be Published
1WFZ
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SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER PROTEIN U (ISCU)
Descriptor:nitrogen fixation cluster-like, ZINC ION
Authors:Nakanishi, T., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2004-11-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of Iron-sulfur cluster protein U (IscU)
To be Published
1WGD
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SOLUTION STRUCTURE OF THE UBL-DOMAIN OF HERP
Descriptor:Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
Authors:Nakanishi, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the Ubl-domain of Herp
To be Published
1WH0
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SOLUTION STRUCTURE OF THE CS DOMAIN OF HUMAN USP19
Descriptor:Ubiquitin carboxyl-terminal hydrolase 19
Authors:Nakanishi, T., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the CS domain of human USP19
To be Published
1WHD
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SOLUTION STRUCTURE OF THE PDZ DOMAIN OF RGS3
Descriptor:regulator of G-protein signaling 3
Authors:Nakanishi, T., Nemoto, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of RGS3
To be Published
1WJI
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SOLUTION STRUCTURE OF THE UBA DOMAIN OF HUMAN TUDOR DOMAIN CONTAINING PROTEIN 3
Descriptor:Tudor domain containing protein 3
Authors:Kamatari, Y.O., Tochio, N., Nakanishi, T., Miyamoto, K., Li, H., Kobayashi, N., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-29
Release date:2004-11-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3
To be Published
1VBG
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PYRUVATE PHOSPHATE DIKINASE FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBH
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PYRUVATE PHOSPHATE DIKINASE WITH BOUND MG-PEP FROM MAIZE
Descriptor:pyruvate,orthophosphate dikinase, MAGNESIUM ION, SULFATE ION, ...
Authors:Nakanishi, T., Nakatsu, T., Matsuoka, M., Sakata, K., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1WT5
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THE CRYSTAL STRUCTURE OF A HUMANIZED ANTIBODY FV 528
Descriptor:ANTI EGFR ANTIBODY FV REGION
Authors:Makabe, K., Tsumoto, K., Asano, R., Kondo, H., Kumagai, I.
Deposit date:2004-11-16
Release date:2005-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
1WGE
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SOLUTION STRUCTURE OF THE MOUSE DESR1
Descriptor:Hypothetical protein 2610018L09Rik, ZINC ION
Authors:Nakanishi, T., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2005-08-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the mouse DESR1
To be Published
2DQC
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HY33F) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQD
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (HY50F) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQE
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (HY53A) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQF
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (Y33AY53A) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQG
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (HY53F) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-25
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQH
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (HY58A) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQI
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT (LY50A) COMPLEXED WITH HEN EGG LYSOZYME
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2DQJ
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CRYSTAL STRUCTURE OF HYHEL-10 FV (WILD-TYPE) COMPLEXED WITH HEN EGG LYSOZYME AT 1.8A RESOLUTION
Descriptor:lysozyme binding Ig kappa chain V23-J2 region, Ig VH,anti-lysozyme, Lysozyme C
Authors:Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I.
Deposit date:2006-05-26
Release date:2007-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL
J.Biol.Chem., 282, 2007
2Z4Q
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CRYSTAL STRUCTURE OF A MURINE ANTIBODY FAB 528
Descriptor:anti egfr antibody fab, light chain, heavy chain, ...
Authors:Nakanishi, T., Tsumoto, K., Asano, R., Kondo, H., Kumagai, I.
Deposit date:2007-06-22
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
2EIZ
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CRYSTAL STRUCTURE OF HUMANIZED HYHEL-10 FV MUTANT(HW47Y)-HEN LYSOZYME COMPLEX
Descriptor:ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
Authors:Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Deposit date:2007-03-14
Release date:2008-03-18
Last modified:2014-02-26
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
2EKS
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CRYSTAL STRUCTURE OF HUMANIZED HYHEL-10 FV-HEN LYSOZYME COMPLEX
Descriptor:ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
Authors:Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Deposit date:2007-03-24
Release date:2008-03-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
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