Author results

6L0C
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CRYSTAL STRUCTURE OF HIV-1 INTEGRASE CATALYTIC CORE DOMAIN (A128T/K173Q/F185K)
Descriptor:Integrase, SULFATE ION, ARSENIC
Authors:Nakamura, T., Nakamura, T.
Deposit date:2019-09-26
Release date:2020-07-01
Last modified:2020-09-30
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:A Conformational Escape Reaction of HIV-1 against an Allosteric Integrase Inhibitor.
J.Virol., 94, 2020
6L9U
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CRYSTAL STRUCTURE OF MOUSE TIFA
Descriptor:TRAF-interacting protein with FHA domain-containing protein A
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2019-11-11
Release date:2020-04-01
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity.
Sci Rep, 10, 2020
6L9V
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CRYSTAL STRUCTURE OF MOUSE TIFA (T9D/C36S MUTANT)
Descriptor:TRAF-interacting protein with FHA domain-containing protein A
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2019-11-11
Release date:2020-04-01
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity.
Sci Rep, 10, 2020
6L9W
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CRYSTAL STRUCTURE OF MOUSE TIFA (T9E/C36S MUTANT)
Descriptor:TRAF-interacting protein with FHA domain-containing protein A
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2019-11-11
Release date:2020-04-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity.
Sci Rep, 10, 2020
2ZS6
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HA3 SUBCOMPONENT OF BOTULINUM TYPE C PROGENITOR TOXIN
Descriptor:Hemagglutinin components HA3
Authors:Nakamura, T., Tonozuka, T., Kotani, M., Oguma, K., Nishikawa, A.
Deposit date:2008-09-02
Release date:2008-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the HA3 Subcomponent of Clostridium botulinum Type C Progenitor Toxin
J.Mol.Biol., 385, 2009
6IJY
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CRYSTAL STRUCTURE OF HUMAN MTH1(G2K/C87A/C104S MUTANT) IN COMPLEX WITH 8-OXO-DGTP DETERMINED USING A CRYSTAL OBTAINED UNDER MICROGRAVITY
Descriptor:7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION, ...
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2018-10-12
Release date:2019-02-20
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:X-ray Structure Analysis of Human Oxidized Nucleotide Hydrolase MTH1 using Crystals Obtained under Microgravity.
Int. J. Microgravity Sci. Appl., 36, 2019
3AH1
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HA1 SUBCOMPONENT OF BOTULINUM TYPE C PROGENITOR TOXIN COMPLEXED WITH N-ACETYLNEURAMIC ACID
Descriptor:Main hemagglutinin component, N-acetyl-beta-neuraminic acid
Authors:Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
Deposit date:2010-04-13
Release date:2010-04-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin
J.Mol.Biol., 376, 2008
3AH2
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HA1 SUBCOMPONENT OF BOTULINUM TYPE C PROGENITOR TOXIN COMPLEXED WITH N-ACETYLGALACTOSAMINE
Descriptor:Main hemagglutinin component, 2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
Deposit date:2010-04-13
Release date:2010-04-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin
J.Mol.Biol., 376, 2008
3AH4
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HA1 SUBCOMPONENT OF BOTULINUM TYPE C PROGENITOR TOXIN COMPLEXED WITH GALACTOSE
Descriptor:Main hemagglutinin component, beta-D-galactopyranose
Authors:Nakamura, T., Tonozuka, T., Ide, A., Yuzawa, T., Oguma, K., Nishikawa, A.
Deposit date:2010-04-13
Release date:2010-04-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Sugar-binding sites of the HA1 subcomponent of Clostridium botulinum type C progenitor toxin
J.Mol.Biol., 376, 2008
2ZOE
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HA3 SUBCOMPONENT OF CLOSTRIDIUM BOTULINUM TYPE C PROGENITOR TOXIN, COMPLEX WITH N-ACETYLNEURAMIC ACID
Descriptor:Hemagglutinin components HA3, N-acetyl-beta-neuraminic acid
Authors:Nakamura, T., Kotani, M., Tonozuka, T., Ide, A., Oguma, K., Nishikawa, A.
Deposit date:2008-05-09
Release date:2008-12-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the HA3 Subcomponent of Clostridium botulinum Type C Progenitor Toxin
J.Mol.Biol., 385, 2009
3AJ5
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HA1 (HA33) SUBCOMPONENT OF BOTULINUM TYPE C PROGENITOR TOXIN COMPLEXED WITH N-ACETYLGALACTOSAMINE, BOUND AT SITE II
Descriptor:Main hemagglutinin component, 2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Nakamura, T., Tonozuka, T., Sato, R., Oguma, K., Nishikawa, A.
Deposit date:2010-05-24
Release date:2011-06-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
3AJ6
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HA1 (HA33) MUTANT F179I OF BOTULINUM TYPE C PROGENITOR TOXIN COMPLEXED WITH N-ACETYLGALACTOSAMINE, BOUND AT SITE II
Descriptor:Main hemagglutinin component, 2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Nakamura, T., Tonozuka, T., Sato, R., Oguma, K., Nishikawa, A.
Deposit date:2010-05-24
Release date:2011-06-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin
Arch.Biochem.Biophys., 512, 2011
2E2G
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CRYSTAL STRUCTURE OF ARCHAEAL PEROXIREDOXIN, THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1 (PRE-OXIDATION FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
Deposit date:2006-11-13
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2E2M
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CRYSTAL STRUCTURE OF ARCHAEAL PEROXIREDOXIN, THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1 (SULFINIC ACID FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
Deposit date:2006-11-14
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2NVL
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CRYSTAL STRUCTURE OF ARCHAEAL PEROXIREDOXIN, THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1 (SULFONIC ACID FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Yamamoto, T., Abe, M., Matsumura, H., Hagihara, Y., Goto, T., Yamaguchi, T., Inoue, T.
Deposit date:2006-11-13
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZCT
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OXIDATION OF ARCHAEAL PEROXIREDOXIN INVOLVES A HYPERVALENT SULFUR INTERMEDIATE
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Hagihara, Y., Abe, M., Inoue, T., Yamamoto, T., Matsumura, H.
Deposit date:2007-11-12
Release date:2008-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate
Proc.Natl.Acad.Sci.Usa, 105, 2008
1X0R
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THIOREDOXIN PEROXIDASE FROM AEROPYRUM PERNIX K1
Descriptor:Probable peroxiredoxin, 1,2-ETHANEDIOL
Authors:Nakamura, T., Yamamoto, T., Inoue, T., Matsumura, H., Kobayashi, A., Hagihara, Y., Uegaki, K., Ataka, M., Kai, Y., Ishikawa, K.
Deposit date:2005-03-28
Release date:2005-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1
Proteins, 62, 2006
3A2V
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PEROXIREDOXIN (C207S) FROM AEROPYRUM PERNIX K1 COMPLEXED WITH HYDROGEN PEROXIDE
Descriptor:Probable peroxiredoxin, PEROXIDE ION
Authors:Nakamura, T., Kado, Y., Yamaguchi, F., Ishikawa, K., Matsumura, H., Inoue, T.
Deposit date:2009-06-04
Release date:2009-10-27
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A2W
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PEROXIREDOXIN (C50S) FROM AEROPYTUM PERNIX K1 (PEROXIDE-BOUND FORM)
Descriptor:Probable peroxiredoxin, GLYCEROL, PEROXIDE ION
Authors:Nakamura, T., Kado, Y., Yamaguchi, F., Matsumura, H., Ishikawa, K., Inoue, T.
Deposit date:2009-06-04
Release date:2009-10-27
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A2X
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PEROXIREDOXIN (C50S) FROM AEROPYRUM PERNIX K1 (ACETATE-BOUND FORM)
Descriptor:Probable peroxiredoxin, ACETATE ION
Authors:Nakamura, T., Kado, Y., Yamaguchi, F., Matsumura, H., Ishikawa, K., Inoue, T.
Deposit date:2009-06-04
Release date:2009-10-27
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A5W
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PEROXIREDOXIN (WILD TYPE) FROM AEROPYRUM PERNIX K1 (REDUCED FORM)
Descriptor:Probable peroxiredoxin
Authors:Nakamura, T., Kado, Y., Yamaguchi, T., Matsumura, H., Ishikawa, K., Inoue, T.
Deposit date:2009-08-12
Release date:2009-10-27
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A6S
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CRYSTAL STRUCTURE OF THE MUTT PROTEIN
Descriptor:Mutator mutT protein, SODIUM ION, L(+)-TARTARIC ACID
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6T
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CRYSTAL STRUCTURE OF MUTT-8-OXO-DGMP COMPLEX
Descriptor:Mutator mutT protein, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, SODIUM ION, ...
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6U
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CRYSTAL STRUCTURE OF MUTT-8-OXO-DGMP-MN(II) COMPLEX
Descriptor:Mutator mutT protein, MANGANESE (II) ION, SULFATE ION, ...
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6V
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CRYSTAL STRUCTURE OF THE MUTT PROTEIN IN MN(II) BOUND HOLO FORM
Descriptor:Mutator mutT protein, MANGANESE (II) ION, SODIUM ION, ...
Authors:Nakamura, T., Yamagata, Y.
Deposit date:2009-09-09
Release date:2009-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
169963
PDB entries from 2020-10-14