Author results

1UHN
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THE CRYSTAL STRUCTURE OF THE CALCIUM BINDING PROTEIN ATCBL2 FROM ARABIDOPSIS THALIANA
Descriptor:calcineurin B-like protein 2, CALCIUM ION
Authors:Nagae, M., Nozawa, A., Koizumi, N., Sano, H., Hashimoto, H., Sato, M., Shimizu, T.
Deposit date:2003-07-07
Release date:2003-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of the Novel Calcium-binding Protein AtCBL2 from Arabidopsis thaliana
J.Biol.Chem., 278, 2003
2ZOT
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 1)
Descriptor:Spondin-1
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZOU
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CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 2)
Descriptor:Spondin-1, 1,2-ETHANEDIOL
Authors:Nagae, M., Nogi, T., Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
3WBD
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CRYSTAL STRUCTURE OF ANTI-POLYSIALIC ACID ANTIBODY SINGLE CHAIN FV FRAGMENT (MAB735) COMPLEXED WITH OCTASIALIC ACID
Descriptor:single chain Fv fragment of mAb735, CITRATE ANION, O-SIALIC ACID
Authors:Nagae, M., Ikeda, A., Hanashima, S., Kitajima, K., Sato, C., Yamaguchi, Y.
Deposit date:2013-05-14
Release date:2013-10-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of anti-polysialic acid antibody single chain Fv fragment complexed with octasialic acid: insight into the binding preference for polysialic acid.
J.Biol.Chem., 288, 2013
3WSR
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CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH O-GLYCOSYLATED PODOPLANIN
Descriptor:C-type lectin domain family 1 member B, Peptide from Podoplanin, N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE, ...
Authors:Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
Deposit date:2014-03-20
Release date:2014-10-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
3WWK
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CRYSTAL STRUCTURE OF CLEC-2 IN COMPLEX WITH RHODOCYTIN
Descriptor:C-type lectin domain family 1 member B, Snaclec rhodocytin subunit alpha, Snaclec rhodocytin subunit beta
Authors:Nagae, M., Morita-Matsumoto, K., Kato, M., Kato-Kaneko, M., Kato, Y., Yamaguchi, Y.
Deposit date:2014-06-20
Release date:2014-10-22
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin
Structure, 22, 2014
5AV7
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CRYSTAL STRUCTURE OF CALSEPA LECTIN IN COMPLEX WITH BISECTED GLYCAN
Descriptor:Lectin, O1-METHYL-MANNOSE, ALPHA-D-MANNOSE, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AVA
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CRYSTAL STRUCTURE OF PHA-E LECTIN IN COMPLEX WITH BISECTED GLYCAN
Descriptor:Erythroagglutinin, MANGANESE (II) ION, CALCIUM ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-06-12
Release date:2016-04-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AZW
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CRYSTAL STRUCTURE OF P24BETA1 GOLD DOMAIN
Descriptor:Transmembrane emp24 domain-containing protein 2, 1,2-ETHANEDIOL
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZX
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CRYSTAL STRUCTURE OF P24DELTA1 GOLD DOMAIN (NATIVE 1)
Descriptor:Transmembrane emp24 domain-containing protein 10, SULFATE ION
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZY
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CRYSTAL STRUCTURE OF P24DELTA1 GOLD DOMAIN (NATIVE 2)
Descriptor:Transmembrane emp24 domain-containing protein 10, SULFATE ION, 1,2-ETHANEDIOL
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2015-10-23
Release date:2016-09-14
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5GU5
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CRYSTAL STRUCTURE OF P24GAMMA2 GOLD DOMAIN DETERMINED BY SULFUR-SAD
Descriptor:Transmembrane emp24 domain-containing protein 5, BROMIDE ION
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2016-08-25
Release date:2017-01-25
Last modified:2017-03-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic analysis of murine p24 gamma 2 Golgi dynamics domain
Proteins, 85, 2017
5GZ8
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CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF PROTEIN O-MANNOSYL KINASE IN LIGAND-FREE FORM
Descriptor:Protein O-mannose kinase
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GZ9
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CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF PROTEIN O-MANNOSYL KINASE IN COMPLEXES WITH AMP-PNP, MAGNESIUM IONS AND GLYCOPEPTIDE
Descriptor:Protein O-mannose kinase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION, ...
Authors:Nagae, M., Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
2D6K
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD (CRYSTAL FORM 1)
Descriptor:lectin, galactose binding, soluble 9
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6L
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD (CRYSTAL FORM 2)
Descriptor:lectin, galactose binding, soluble 9
Authors:Nagae, M., Nishi, N., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6M
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH LACTOSE
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6N
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6O
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH N-ACETYLLACTOSAMINE DIMER
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2014-12-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6P
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CRYSTAL STRUCTURE OF MOUSE GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH T-ANTIGEN
Descriptor:lectin, galactose binding, soluble 9, ...
Authors:Nagae, M., Nishi, N., Nakamura, T., Murata, T., Wakatsuki, S., Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2EAB
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CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM (APO FORM)
Descriptor:Alpha-fucosidase, CALCIUM ION, 1,2-ETHANEDIOL, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAC
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CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEX WITH DEOXYFUCONOJIRIMYCIN
Descriptor:Alpha-fucosidase, CALCIUM ION, (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAD
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CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEX WITH SUBSTRATE
Descriptor:Alpha-fucosidase, CALCIUM ION, BETA-D-GLUCOSE, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAE
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CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEXES WITH PRODUCTS
Descriptor:Alpha-fucosidase, ALPHA-L-FUCOSE, BETA-L-FUCOSE, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAK
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CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH LACTOSE
Descriptor:Galectin-9, ALPHA-LACTOSE, (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, ...
Authors:Nagae, M., Nakamura-Tsuruta, S., Nishi, N., Nakamura, T., Hirabayashi, J., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-09-25
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
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