Author results

3ABG
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X-RAY CRYSTAL ANALYSIS OF BILIRUBIN OXIDASE FROM MYROTHECIUM VERRUCARIA AT 2.3 ANGSTROM RESOLUTION USING A TWIN CRYSTAL
Descriptor:Bilirubin oxidase, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Mizutani, K., Toyoda, M., Sagara, K., Takahashi, N., Sato, A., Kamitaka, Y., Tsujimura, S., Nakanishi, Y., Sugiura, T., Yamaguchi, S., Kano, K., Mikami, B.
Deposit date:2009-12-10
Release date:2010-08-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal
Acta Crystallogr.,Sect.F, 66, 2010
3VUP
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BETA-1,4-MANNANASE FROM THE COMMON SEA HARE APLYSIA KURODAI
Descriptor:Beta-1,4-mannanase, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION
Authors:Mizutani, K., Tsuchiya, S., Toyoda, M., Nanbu, Y., Tominaga, K., Yuasa, K., Takahashi, N., Tsuji, A., Mikami, B.
Deposit date:2012-07-04
Release date:2012-10-17
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution.
Acta Crystallogr.,Sect.F, 68, 2012
3AOU
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STRUCTURE OF THE NA+ UNBOUND ROTOR RING MODIFIED WITH N,N F-DICYCLOHEXYLCARBODIIMIDE OF THE NA+-TRANSPORTING V-ATPASE
Descriptor:V-type sodium ATPase subunit K, DICYCLOHEXYLUREA, UNDECYL-MALTOSIDE
Authors:Mizutani, K., Yamamoto, M., Yamato, I., Kakinuma, Y., Shirouzu, M., Yokoyama, S., Iwata, S., Murata, T.
Deposit date:2010-10-06
Release date:2011-08-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structure of the rotor ring modified with N,N'-dicyclohexylcarbodiimide of the Na+-transporting vacuolar ATPase.
Proc.Natl.Acad.Sci.USA, 108, 2011
1IEJ
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OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION
Descriptor:OVOTRANSFERRIN, FE (III) ION, CARBONATE ION
Authors:Mizutani, K., Mikami, B., Hirose, M.
Deposit date:2001-04-10
Release date:2001-06-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe.
J.Mol.Biol., 309, 2001
1IQ7
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OVOTRANSFERRIN, C-TERMINAL LOBE, APO FORM
Descriptor:Ovotransferrin, N-ACETYL-D-GLUCOSAMINE, SULFATE ION
Authors:Mizutani, K., Muralidhara, B.K., Yamashita, H., Tabata, S., Mikami, B., Hirose, M.
Deposit date:2001-07-06
Release date:2001-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway.
J.Biol.Chem., 276, 2001
1NFT
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OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM
Descriptor:PROTEIN (OVOTRANSFERRIN), SULFATE ION, FE (III) ION, ...
Authors:Mizutani, K., Yamashita, H., Kurokawa, H., Mikami, B., Hirose, M.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe.
J.Biol.Chem., 274, 1999
1TFA
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OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM
Descriptor:PROTEIN (OVOTRANSFERRIN), SULFATE ION
Authors:Mizutani, K., Yamashita, H., Mikami, B., Hirose, M.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe.
J.Biol.Chem., 274, 1999
1V9F
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CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF PSEUDOURIDINE SYNTHASE RLUD FROM ESCHERICHIA COLI
Descriptor:Ribosomal large subunit pseudouridine synthase D, PHOSPHATE ION
Authors:Mizutani, K., Machida, Y., Unzai, S., Park, S.-Y., Tame, J.R.H.
Deposit date:2004-01-26
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
2D3I
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CRYSTAL STRUCTURE OF ALUMINUM-BOUND OVOTRANSFERRIN AT 2.15 ANGSTROM RESOLUTION
Descriptor:Ovotransferrin, ALUMINUM ION, BICARBONATE ION
Authors:Mizutani, K., Mikami, B., Aibara, S., Hirose, M.
Deposit date:2005-09-28
Release date:2005-11-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
3VM5
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RECOMBINANT MEDAKA FISH ALPHA-AMYLASE EXPRESSED IN YEAST PICHIA PASTORIS
Descriptor:alpha-amylase, CALCIUM ION, CHLORIDE ION
Authors:Mizutani, K., Toyoda, M., Mikami, B.
Deposit date:2011-12-08
Release date:2012-06-06
Last modified:2013-06-26
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris.
Biochim.Biophys.Acta, 1824, 2012
5AZD
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CRYSTAL STRUCTURE OF THERMOPHILIC RHODOPSIN.
Descriptor:Bacteriorhodopsin
Authors:Mizutani, K., Hashimoto, N., Tsukamoto, T., Yamashita, K., Yamamoto, M., Sudo, Y., Murata, T.
Deposit date:2015-09-30
Release date:2016-04-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
1V9K
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THE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PSEUDOURIDINE SYNTHASE RLUC FROM ESCHERICHIA COLI
Descriptor:Ribosomal large subunit pseudouridine synthase C, SULFATE ION
Authors:Machida, Y., Mizutani, K., Unzai, S., Park, S.-Y., Tame, J.R.H.
Deposit date:2004-01-26
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
5KNB
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CRYSTAL STRUCTURE OF THE 2 ADP-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (3.251 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KNC
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CRYSTAL STRUCTURE OF THE 3 ADP-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (3.015 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
5KND
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CRYSTAL STRUCTURE OF THE PI-BOUND V1 COMPLEX
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Suzuki, K., Mizutani, K., Maruyama, S., Shimono, K., Imai, F.L., Muneyuki, E., Kakinuma, Y., Ishizuka-Katsura, Y., Shirouzu, M., Yokoyama, S., Yamato, I., Murata, T.
Deposit date:2016-06-28
Release date:2016-11-02
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.888 Å)
Cite:Crystal structures of the ATP-binding and ADP-release dwells of the V1 rotary motor
Nat Commun, 7, 2016
2Z9U
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CRYSTAL STRUCTURE OF PYRIDOXAMINE-PYRUVATE AMINOTRANSFERASE FROM MESORHIZOBIUM LOTI AT 2.0 A RESOLUTION
Descriptor:Aspartate aminotransferase, SULFATE ION, GLYCEROL
Authors:Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.
Deposit date:2007-09-26
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2Z9V
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CRYSTAL STRUCTURE OF PYRIDOXAMINE-PYRUVATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE
Descriptor:Aspartate aminotransferase, SULFATE ION, 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL, ...
Authors:Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.
Deposit date:2007-09-26
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2Z9W
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CRYSTAL STRUCTURE OF PYRIDOXAMINE-PYRUVATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL
Descriptor:Aspartate aminotransferase, SULFATE ION, 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, ...
Authors:Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.
Deposit date:2007-09-26
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
2Z9X
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CRYSTAL STRUCTURE OF PYRIDOXAMINE-PYRUVATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXYL-L-ALANINE
Descriptor:Aspartate aminotransferase, SULFATE ION, CHLORIDE ION, ...
Authors:Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.
Deposit date:2007-09-26
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099
J.Biol.Chem., 283, 2008
3VR2
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CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE [EA3B3]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR3
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CRYSTAL STRUCTURE OF AMP-PNP BOUND A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE [BA3B3]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR4
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CRYSTAL STRUCTURE OF ENTEROCOCCUS HIRAE V1-ATPASE [EV1]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-09
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.172 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR5
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CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE ENTEROCOCCUS HIRAE V1-ATPASE [EV1(L)]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR6
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CRYSTAL STRUCTURE OF AMP-PNP BOUND ENTEROCOCCUS HIRAE V1-ATPASE [BV1]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
5ZE9
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CRYSTAL STRUCTURE OF AMP-PNP BOUND MUTANT A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
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