Author results

1BJ3
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CRYSTAL STRUCTURE OF COAGULATION FACTOR IX-BINDING PROTEIN (IX-BP) FROM VENOM OF HABU SNAKE WITH A HETERODIMER OF C-TYPE LECTIN DOMAINS
Descriptor:PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN A), PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN B), CALCIUM ION
Authors:Mizuno, H., Fujimoto, Z., Koizumi, M., Kano, H., Atoda, H., Morita, T.
Deposit date:1998-07-02
Release date:1999-08-16
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of coagulation factor IX-binding protein from habu snake venom at 2.6 A: implication of central loop swapping based on deletion in the linker region.
J.Mol.Biol., 289, 1999
1IXX
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CRYSTAL STRUCTURE OF COAGULATION FACTORS IX/X-BINDING PROTEIN (IX/X-BP) FROM VENOM OF HABU SNAKE WITH A HETERODIMER OF C-TYPE LECTIN DOMAINS
Descriptor:COAGULATION FACTORS IX/X-BINDING PROTEIN, CALCIUM ION
Authors:Mizuno, H., Fujimoto, Z., Koizumi, M., Kano, H.
Deposit date:1997-05-01
Release date:1998-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of coagulation factors IX/X-binding protein, a heterodimer of C-type lectin domains.
Nat.Struct.Biol., 4, 1997
1IOD
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CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE COAGULATION FACTOR X BINDING PROTEIN FROM SNAKE VENOM AND THE GLA DOMAIN OF FACTOR X
Descriptor:COAGULATION FACTOR X BINDING PROTEIN, COAGULATION FACTOR X GLA DOMAIN, CALCIUM ION
Authors:Mizuno, H., Fujimoto, Z., Atoda, H., Morita, T.
Deposit date:2001-02-27
Release date:2001-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an anticoagulant protein in complex with the Gla domain of factor X.
Proc.Natl.Acad.Sci.Usa, 98, 2001
2Z1O
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CRYSTAL STRUCTURE OF A PHOTOSWITCHABLE GFP-LIKE PROTEIN DRONPA IN THE BRIGHT-STATE
Descriptor:Fluorescent protein Dronpa
Authors:Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
Deposit date:2007-05-10
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Light-dependent regulation of structural flexibility in a photochromic fluorescent protein
Proc.Natl.Acad.Sci.Usa, 105, 2008
2Z6X
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CRYSTAL STRUCTURE OF 22G, THE WILD-TYPE PROTEIN OF THE PHOTOSWITCHABLE GFP-LIKE PROTEIN DRONPA
Descriptor:photochromic protein Dronpa
Authors:Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
Deposit date:2007-08-09
Release date:2008-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2Z6Y
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CRYSTAL STRUCTURE OF A PHOTOSWITCHABLE GFP-LIKE PROTEIN DRONPA IN THE BRIGHT-STATE
Descriptor:Fluorescent protein Dronpa
Authors:Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
Deposit date:2007-08-09
Release date:2008-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2Z6Z
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CRYSTAL STRUCTURE OF A PHOTOSWITCHABLE GFP-LIKE PROTEIN DRONPA IN THE BRIGHT-STATE
Descriptor:Fluorescent protein Dronpa
Authors:Kikuchi, A., Jeyakanthan, J., Taka, J., Shiro, Y., Mizuno, H., Miyawaki, A.
Deposit date:2007-08-09
Release date:2008-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1UA7
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CRYSTAL STRUCTURE ANALYSIS OF ALPHA-AMYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH ACARBOSE
Descriptor:Alpha-amylase, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, 4,6-DIDEOXYGLUCOSE, ...
Authors:Kagawa, M., Fujimoto, Z., Momma, M., Takase, K., Mizuno, H.
Deposit date:2003-03-03
Release date:2004-05-18
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of Bacillus subtilis alpha-amylase in complex with acarbose
J.BACTERIOL., 185, 2003
1WRN
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METAL ION DEPENDENCY OF THE ANTITERMINATOR PROTEIN, HUTP, FOR BINDING TO THE TERMINATOR REGION OF HUT MRNA- A STRUCTURAL BASIS
Descriptor:Hut operon positive regulatory protein, MANGANESE (II) ION, HISTIDINE, ...
Authors:Kumarevel, T., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-10-25
Release date:2005-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis
Nucleic Acids Res., 33, 2005
1WRO
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METAL ION DEPENDENCY OF THE ANTITERMINATOR PROTEIN, HUTP, FOR BINDING TO THE TERMINATOR REGION OF HUT MRNA- A STRUCTURAL BASIS
Descriptor:Hut operon positive regulatory protein, BARIUM ION, HISTIDINE
Authors:Kumarevel, T., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-10-25
Release date:2005-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis
Nucleic Acids Res., 33, 2005
1WRQ
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CRYSTAL STRUCTURE OF HUTP-ANTITERMINATION COMPLEX
Descriptor:5'-R(*UP*UP*UP*AP*GP*UP*U)-3', Hut operon positive regulatory protein, MAGNESIUM ION, ...
Authors:Kumarevel, T., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-10-25
Release date:2005-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the HutP-antitermination complex
To be published
1ISV
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISW
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOBIOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISX
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH XYLOTRIOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-XYLOPYRANOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISY
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH GLUCOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-GLUCOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1ISZ
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH GALACTOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-D-GALACTOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1IT0
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CRYSTAL STRUCTURE OF XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS E-86 COMPLEXED WITH LACTOSE
Descriptor:endo-1,4-beta-D-xylanase, BETA-LACTOSE
Authors:Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.
Deposit date:2001-12-27
Release date:2002-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.
J.Mol.Biol., 316, 2002
1PE6
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REFINED X-RAY STRUCTURE OF PAPAIN(DOT)E-64-C COMPLEX AT 2.1-ANGSTROMS RESOLUTION
Descriptor:PAPAIN, N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE, METHANOL
Authors:Yamamoto, D., Matsumoto, K., Ohishi, H., Ishida, T., Inoue, M., Kitamura, K., Mizuno, H.
Deposit date:1991-05-14
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Refined x-ray structure of papain.E-64-c complex at 2.1-A resolution.
J.Biol.Chem., 266, 1991
1BAG
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ALPHA-AMYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH MALTOPENTAOSE
Descriptor:ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Fujimoto, Z., Mizuno, H., Takase, K., Doui, N.
Deposit date:1998-01-30
Release date:1998-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a catalytic-site mutant alpha-amylase from Bacillus subtilis complexed with maltopentaose.
J.Mol.Biol., 277, 1998
1J34
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CRYSTAL STRUCTURE OF MG(II)-AND CA(II)-BOUND GLA DOMAIN OF FACTOR IX COMPLEXED WITH BINDING PROTEIN
Descriptor:coagulation factor IX-binding protein A chain, coagulation factor IX-binding protein B chain, Coagulation factor IX, ...
Authors:Shikamoto, Y., Morita, T., Fujimoto, Z., Mizuno, H.
Deposit date:2003-01-20
Release date:2003-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
1J35
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CRYSTAL STRUCTURE OF CA(II)-BOUND GLA DOMAIN OF FACTOR IX COMPLEXED WITH BINDING PROTEIN
Descriptor:coagulation factor IX-binding protein A chain, Coagulation factor IX-binding protein B chain, Coagulation factor IX, ...
Authors:Shikamoto, Y., Morita, T., Fujimoto, Z., Mizuno, H.
Deposit date:2003-01-20
Release date:2003-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
1WMQ
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STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TO A SINGLE STRANDED REGION OF HUT MRNA
Descriptor:5'-R(P*UP*UP*UP*AP*GP*UP*U)-3', Hut operon positive regulatory protein, MAGNESIUM ION, ...
Authors:Kumarevel, T.S., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-07-14
Release date:2005-03-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand.
Nature, 434, 2005
1WPS
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CRYSTAL STRUCTURE OF HUTP, AN RNA BINDING ANTI-TERMINATION PROTEIN
Descriptor:Hut operon positive regulatory protein
Authors:Kumarevel, T.S., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-09-13
Release date:2005-03-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand.
Nature, 434, 2005
1WPT
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CRYSTAL STRUCTURE OF HUTP, AN RNA BINDING ANTI-TERMINATION PROTEIN
Descriptor:Hut operon positive regulatory protein
Authors:Kumarevel, T., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-09-13
Release date:2005-08-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis
Nucleic Acids Res., 33, 2005
1WPU
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CRYSTAL STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TO A SINGLE STRANDED REGION OF HUT MRNA
Descriptor:5'-R(*UP*UP*GP*AP*GP*UP*U)-3', Hut operon positive regulatory protein, MAGNESIUM ION, ...
Authors:Kumarevel, T.S., Mizuno, H., Kumar, P.K.R.
Deposit date:2004-09-13
Release date:2005-08-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural basis for the HutP antitermination Complex:Role of divalent metal ions in allosteric activation
To be Published