Author results

1PD2
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CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE COMPLEX WITH GLUTATHIONE
Descriptor:HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE, GLUTATHIONE
Authors:Miyano, M., Ago, H.
Deposit date:1998-12-14
Release date:1999-10-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cloning and crystal structure of hematopoietic prostaglandin D synthase.
Cell(Cambridge,Mass.), 90, 1997
2YW9
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CRYSTAL STRUCTURE OF TT0143 FROM THERMUS THERMOPHILUS HB8
Descriptor:Enoyl-[acyl carrier protein] reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Miyano, M., Ago, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2007-05-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of TT0143 from Thermus thermophilus HB8
To be Published
2ZIY
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CRYSTAL STRUCTURE OF SQUID RHODOPSIN
Descriptor:Rhodopsin, RETINAL, PALMITIC ACID
Authors:Miyano, M., Shimamura, T.
Deposit date:2008-02-27
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region
J.Biol.Chem., 283, 2008
1APA
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X-RAY STRUCTURE OF A POKEWEED ANTIVIRAL PROTEIN, CODED BY A NEW GENOMIC CLONE, AT 0.23 NM RESOLUTION. A MODEL STRUCTURE PROVIDES A SUITABLE ELECTROSTATIC FIELD FOR SUBSTRATE BINDING.
Descriptor:POKEWEED ANTIVIRAL PROTEIN
Authors:Ago, H., Kataoka, J., Tsuge, H., Habuka, N., Inagaki, E., Noma, M., Miyano, M.
Deposit date:1993-09-21
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structure of a pokeweed antiviral protein, coded by a new genomic clone, at 0.23 nm resolution. A model structure provides a suitable electrostatic field for substrate binding.
Eur.J.Biochem., 225, 1994
2CZT
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LIPOCALIN-TYPE PROSTAGLANDIN D SYNTHASE
Descriptor:Prostaglandin-H2 D-isomerase
Authors:Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-17
Release date:2006-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2CZU
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LIPOCALIN-TYPE PROSTAGLANDIN D SYNTHASE
Descriptor:Prostaglandin-H2 D-isomerase
Authors:Kumasaka, T., Irikura, D., Ago, H., Aritake, K., Yamamoto, M., Inoue, T., Miyano, M., Urade, Y., Hayaishi, O., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-17
Release date:2006-10-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2EQL
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CRYSTALLOGRAPHIC STUDIES OF A CALCIUM BINDING LYSOZYME FROM EQUINE MILK AT 2.5 ANGSTROMS RESOLUTION
Descriptor:HORSE MILK LYSOZYME
Authors:Tsuge, H., Ago, H., Miyano, M.
Deposit date:1994-05-27
Release date:1994-07-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic studies of a calcium binding lysozyme from equine milk at 2.5 A resolution.
J.Biochem.(Tokyo), 111, 1992
3PCV
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CRYSTAL STRUCTURE ANALYSIS OF HUMAN LEUKOTRIENE C4 SYNTHASE AT 1.9 ANGSTROM RESOLUTION
Descriptor:Leukotriene C4 synthase, GLUTATHIONE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Saino, H., Ago, H., Miyano, M.
Deposit date:2010-10-22
Release date:2011-03-16
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The catalytic architecture of leukotriene C4 synthase with two arginine residues
J.Biol.Chem., 286, 2011
1J1Y
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CRYSTAL STRUCTURE OF PAAI FROM THERMUS THERMOPHILUS HB8
Descriptor:PaaI protein, CHLORIDE ION, MAGNESIUM ION
Authors:Kunishima, N., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-24
Release date:2004-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1ULQ
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CRYSTAL STRUCTURE OF TT0182 FROM THERMUS THERMOPHILUS HB8
Descriptor:putative acetyl-CoA acetyltransferase
Authors:Ago, H., Hamada, K., Ida, K., Kanda, H., Sugahara, M., Yamamoto, M., Kuroishi, C., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-16
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of tt0182 from Thermus thermophilus HB8
To be Published
1ULT
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CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long chain fatty acid-CoA ligase, CITRIC ACID
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-16
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis of the substrate specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer
J.Biol.Chem., 279, 2004
1ULU
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CRYSTAL STRUCTURE OF TT0143 FROM THERMUS THERMOPHILUS HB8
Descriptor:enoyl-acyl carrier protein reductase
Authors:Ago, H., Hamada, K., Ida, K., Kanda, H., Sugahara, M., Yamamoto, M., Nodake, Y., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-16
Release date:2004-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of tt0143 from Thermus thermophilus HB8
To be Published
1V25
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CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-07
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
1V26
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CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, MYRISTIC ACID, ...
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-07
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
1V3T
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CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
1V3U
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CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE IN APO FORM
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
1V3V
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CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE COMPLEXED WITH NADP AND 15-OXO-PGE2
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-06
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
1WLU
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, GLYCEROL
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WLV
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, COENZYME A, ...
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-29
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WM6
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION
Authors:Sugahara, M., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-04
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WN3
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CRYSTAL STRUCTURE OF TT0310 PROTEIN FROM THERMUS THERMOPHILUS HB8
Descriptor:phenylacetic acid degradation protein PaaI, CHLORIDE ION, HEXANOYL-COENZYME A, ...
Authors:Kunishima, N., Sugahara, M., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-27
Release date:2005-07-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
2DDR
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CRYSTAL STRUCTURE OF SPHINGOMYELINASE FROM BACILLUS CEREUS WITH CALCIUM ION
Descriptor:Sphingomyelin phosphodiesterase, CALCIUM ION
Authors:Ago, H., Oda, M., Takahashi, M., Tsuge, H., Ochi, S., Katunuma, N., Miyano, M., Sakurai, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-02
Release date:2006-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
2DDS
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CRYSTAL STRUCTURE OF SPHINGOMYELINASE FROM BACILLUS CEREUS WITH COBALT ION
Descriptor:Sphingomyelin phosphodiesterase, COBALT (II) ION
Authors:Ago, H., Oda, M., Takahashi, M., Tsuge, H., Ochi, S., Katunuma, N., Miyano, M., Sakurai, J., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-02
Release date:2006-05-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus.
J.Biol.Chem., 281, 2006
1F88
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Descriptor:RHODOPSIN, N-ACETYL-D-GLUCOSAMINE, MERCURY (II) ION, ...
Authors:Okada, T., Palczewski, K., Stenkamp, R.E., Miyano, M.
Deposit date:2000-06-29
Release date:2000-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
1HAK
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CRYSTAL STRUCTURE OF RECOMBINANT HUMAN PLACENTAL ANNEXIN V COMPLEXED WITH K-201 AS A CALCIUM CHANNEL ACTIVITY INHIBITOR
Descriptor:ANNEXIN V, 4-[3-{1-(4-BENZYL)PIPERODINYL}PROPIONYL]-7-METHOXY-2,3,4,5-TERTRAHYDRO-1,4-BENZOTHIAZEPINE
Authors:Ago, H., Inagaki, E., Miyano, M.
Deposit date:1997-12-10
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of annexin V with its ligand K-201 as a calcium channel activity inhibitor.
J.Mol.Biol., 274, 1997