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2DI2
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NMR STRUCTURE OF THE HIV-2 NUCLEOCAPSID PROTEIN
Descriptor:Nucleocapsid protein p7, ZINC ION
Authors:Matsui, T., Kodera, Y., Endoh, H., Miyauchi, E., Komatsu, H., Sato, K., Tanaka, T., Kohno, T., Maeda, T.
Deposit date:2006-03-27
Release date:2007-03-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:RNA Recognition Mechanism of the Minimal Active Domain of the Human Immunodeficiency Virus Type-2 Nucleocapsid Protein
J.Biochem.(Tokyo), 141, 2007
2E1X
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NMR STRUCTURE OF THE HIV-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION
Authors:Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.
Deposit date:2006-11-03
Release date:2007-06-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality
Biochem.Biophys.Res.Commun., 358, 2007
2EC7
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SOLUTION STRUCTURE OF HUMAN IMMUNODIFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN
Descriptor:Gag polyprotein (Pr55Gag), ZINC ION
Authors:Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.
Deposit date:2007-02-10
Release date:2008-02-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
Biochemistry, 48, 2009
5WX3
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ALKYLDIKETIDE-COA SYNTHASE FROM EVODIA RUTAECARPA
Descriptor:Alkyldiketide-CoA synthase, COENZYME A, SULFATE ION
Authors:Matsui, T., Kodama, T., Tadakoshi, T., Morita, H.
Deposit date:2017-01-06
Release date:2017-04-26
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292, 2017
5WX4
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ALKYLQUINOLONE SYNTHASE FROM EVODIA RUTAECARPA
Descriptor:alkylquinolone synthase
Authors:Matsui, T., Kodama, T., Tadakoshi, T., Morita, H.
Deposit date:2017-01-06
Release date:2017-04-26
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (2.203 Å)
Cite:2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292, 2017
5WX5
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ALKYLQUINOLONE SYNTHASE Y215V MUTANT FROM EVODIA RUTAECARPA
Descriptor:Alkylquinolone synthase
Authors:Matsui, T., Kodama, T., Tadakoshi, T., Morita, H.
Deposit date:2017-01-06
Release date:2017-04-26
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (3.058 Å)
Cite:2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292, 2017
5WX6
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ALKYLDIKETIDE-COA SYNTHASE W332Q MUTANT FROM EVODIA RUTAECARPA
Descriptor:Alkyldiketide-CoA synthase, SULFATE ION, COENZYME A
Authors:Matsui, T., Kodama, T., Tadakoshi, T., Morita, H.
Deposit date:2017-01-06
Release date:2017-04-26
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292, 2017
5WX7
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ALKYLDIKETIDE-COA SYNTHASE W332G MUTANT FROM EVODIA RUTAECARPA
Descriptor:Alkyldiketide-CoA synthase, COENZYME A, SULFATE ION
Authors:Matsui, T., Kodama, T., Tadakoshi, T., Morita, H.
Deposit date:2017-01-06
Release date:2017-04-26
Last modified:2017-06-14
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:2-Alkylquinolone alkaloid biosynthesis in the medicinal plant Evodia rutaecarpa involves collaboration of two novel type III polyketide synthases
J. Biol. Chem., 292, 2017
6AL3
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LYS49 PLA2 BPII DERIVED FROM THE VENOM OF PROTOBOTHROPS FLAVOVIRIDIS.
Descriptor:Basic phospholipase A2 BP-II, SULFATE ION
Authors:Matsui, T., Kamata, S., Suzuki, A., Oda-Ueda, N., Ogawa, T., Tanaka, Y.
Deposit date:2018-09-05
Release date:2019-01-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:SDS-induced oligomerization of Lys49-phospholipase A2from snake venom.
Sci Rep, 9, 2019
1WNV
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D136A MUTANT OF HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO)
Descriptor:Heme oxygenase, SULFATE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsui, T., Unno, M., Ikeda-Saito, M.
Deposit date:2004-08-10
Release date:2004-11-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Roles of Distal Asp in Heme Oxygenase from Corynebacterium diphtheriae, HmuO: A WATER-DRIVEN OXYGEN ACTIVATION MECHANISM
J.Biol.Chem., 280, 2005
3I8R
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CRYSTAL STRUCTURE OF THE HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO) IN COMPLEX WITH HEME BINDING DITIOTHREITOL (DTT)
Descriptor:Heme oxygenase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Matsui, T., Unno, M., Ikeda-Saito, M.
Deposit date:2009-07-10
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase.
Inorg.Chem., 49, 2010
3I9T
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CRYSTAL STRUCTURE OF THE RAT HEME OXYGENASE (HO-1) IN COMPLEX WITH HEME BINDING DITHIOTHREITOL (DTT)
Descriptor:Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE, (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
Authors:Matsui, T., Unno, M., Ikeda-Saito, M.
Deposit date:2009-07-13
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase.
Inorg.Chem., 49, 2010
3I9U
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CRYSTAL STRUCTURE OF THE RAT HEME OXYGENASE (HO-1) IN COMPLEX WITH HEME BINDING DITHIOERYTHRITOL (DTE)
Descriptor:Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE, (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
Authors:Matsui, T., Unno, M., Ikeda-Saito, M.
Deposit date:2009-07-13
Release date:2010-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase.
Inorg.Chem., 49, 2010
3VO8
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STAPHYLOCOCCUS AUREUS FTSZ GDP-FORM
Descriptor:Cell division protein FtsZ, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE
Authors:Matsui, T., Mogi, N., Yao, M., Tanaka, I.
Deposit date:2012-01-20
Release date:2012-08-29
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.255 Å)
Cite:Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VO9
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STAPHYLOCOCCUS AUREUS FTSZ APO-FORM (SEMET)
Descriptor:Cell division protein FtsZ
Authors:Matsui, T., Yamane, J., Mogi, N., Yao, M., Tanaka, I.
Deposit date:2012-01-20
Release date:2012-08-29
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VPA
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STAPHYLOCOCCUS AUREUS FTSZ APO-FORM
Descriptor:Cell division protein FtsZ
Authors:Matsui, T., Yamane, J., Mogi, N., Yao, M., Tanaka, I.
Deposit date:2012-02-28
Release date:2012-08-29
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.487 Å)
Cite:Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3WGJ
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STAPHYLOCOCCUS AUREUS FTSZ T7 CHIMERA MUTANT, T7BS
Descriptor:Cell division protein FtsZ, CALCIUM ION
Authors:Matsui, T., Tanaka, I., Yao, M.
Deposit date:2013-08-06
Release date:2013-12-25
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.179 Å)
Cite:Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
3WGN
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STAPHYLOCOCCUS AUREUS FTSZ BOUND WITH GTP-GAMMA-S
Descriptor:Cell division protein FtsZ, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
Authors:Matsui, T., Mogi, N., Tanaka, I., Yao, M.
Deposit date:2013-08-06
Release date:2013-12-25
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
1VEC
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CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF RCK/P54, A HUMAN DEAD-BOX PROTEIN
Descriptor:ATP-dependent RNA helicase p54, ZINC ION, L(+)-TARTARIC ACID
Authors:Hogetsu, K., Matsui, T., Yukihiro, Y., Tanaka, M., Sato, T., Kumasaka, T., Tanaka, N.
Deposit date:2004-03-29
Release date:2004-04-13
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes
Genes Cells, 11, 2006
3WVQ
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STRUCTURE OF ATP GRASP PROTEIN
Descriptor:PGM1, SULFATE ION, GLYCEROL
Authors:Matsui, T., Noike, M., Ooya, K., Sasaki, I., Hamano, Y., Maruyama, C., Ishikawa, J., Satoh, Y., Ito, H., Dairi, T., Morita, H.
Deposit date:2014-06-04
Release date:2014-11-19
Last modified:2014-12-31
Method:X-RAY DIFFRACTION (1.955 Å)
Cite:A peptide ligase and the ribosome cooperate to synthesize the peptide pheganomycin.
Nat.Chem.Biol., 11, 2015
3WVR
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STRUCTURE OF ATP GRASP PROTEIN WITH AMP
Descriptor:PGM1, SULFATE ION, ADENOSINE MONOPHOSPHATE, ...
Authors:Matsui, T., Noike, M., Ooya, K., Sasaki, I., Hamano, Y., Maruyama, C., Ishikawa, J., Satoh, Y., Ito, H., Dairi, T., Morita, H.
Deposit date:2014-06-04
Release date:2014-11-19
Last modified:2014-12-31
Method:X-RAY DIFFRACTION (2.175 Å)
Cite:A peptide ligase and the ribosome cooperate to synthesize the peptide pheganomycin.
Nat.Chem.Biol., 11, 2015
1WNW
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D136N MUTANT OF HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO)
Descriptor:Heme oxygenase, IODIDE ION, SULFATE ION, ...
Authors:Unno, M., Matsui, T., Ikeda-Saito, M.
Deposit date:2004-08-10
Release date:2004-11-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Roles of Distal Asp in Heme Oxygenase from Corynebacterium diphtheriae, HmuO: A WATER-DRIVEN OXYGEN ACTIVATION MECHANISM
J.Biol.Chem., 280, 2005
1WNX
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D136E MUTANT OF HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO)
Descriptor:Heme oxygenase, SULFATE ION, SODIUM ION, ...
Authors:Unno, M., Matsui, T., Ikeda-Saito, M.
Deposit date:2004-08-10
Release date:2004-11-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Roles of Distal Asp in Heme Oxygenase from Corynebacterium diphtheriae, HmuO: A WATER-DRIVEN OXYGEN ACTIVATION MECHANISM
J.Biol.Chem., 280, 2005
3VOA
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STAPHYLOCOCCUS AUREUS FTSZ 12-316 GDP-FORM
Descriptor:Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, CALCIUM ION
Authors:Yamane, J., Matsui, T., Mogi, N., Yao, M., Tanaka, I.
Deposit date:2012-01-20
Release date:2012-08-29
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012
3VOB
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STAPHYLOCOCCUS AUREUS FTSZ WITH PC190723
Descriptor:Cell division protein FtsZ, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Yamane, J., Matsui, T., Mogi, N., Yamaguchi, H., Takemoto, H., Yao, M., Tanaka, I.
Deposit date:2012-01-20
Release date:2012-08-29
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus
Acta Crystallogr.,Sect.D, 68, 2012