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8S1R
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BU of 8s1r by Molmil
Crystal structure of SHANK1 PDZ in complex with a SLiM internal ligand
Descriptor: ACETYL GROUP, F-box only protein 41, SH3 and multiple ankyrin repeat domains protein 1
Authors:Li, Y, Trinh, C.H, Wilson, A.J.
Deposit date:2024-02-15
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.979 Å)
Cite:Biophysical and structural analyses of the interaction between the SHANK1 PDZ domain and an internal SLiM.
Biochem.J., 481, 2024
1KGD
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BU of 1kgd by Molmil
Crystal Structure of the Guanylate Kinase-like Domain of Human CASK
Descriptor: FORMIC ACID, PERIPHERAL PLASMA MEMBRANE CASK
Authors:Li, Y, Spangenberg, O, Paarmann, I, Konrad, M, Lavie, A.
Deposit date:2001-11-26
Release date:2001-12-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.314 Å)
Cite:Structural basis for nucleotide-dependent regulation of membrane-associated guanylate kinase-like domains.
J.Biol.Chem., 277, 2002
9KLP
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BU of 9klp by Molmil
Cryo-EM structure of ChCas12b-sgRNA-extended non-target DNA ternary complex (Complex-C)
Descriptor: C2c1 CRISPR-Cas endonuclease RuvC-like domain-containing protein, CALCIUM ION, Non-target DNA strand, ...
Authors:Li, Y, Li, J, Pei, X, Gan, J, Lin, J.
Deposit date:2024-11-14
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Catalytic-state structure of Candidatus Hydrogenedentes Cas12b revealed by cryo-EM studies.
Nucleic Acids Res., 53, 2025
9KLO
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BU of 9klo by Molmil
Cryo-EM structure of ChCas12b-sgRNA-extended non-target DNA ternary complex (Complex-B)
Descriptor: C2c1 CRISPR-Cas endonuclease RuvC-like domain-containing protein, CALCIUM ION, Non-target DNA strand, ...
Authors:Li, Y, Li, J, Pei, X, Gan, J, Lin, J.
Deposit date:2024-11-15
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Catalytic-state structure of Candidatus Hydrogenedentes Cas12b revealed by cryo-EM studies.
Nucleic Acids Res., 53, 2025
9KLN
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BU of 9kln by Molmil
Cryo-EM structure of ChCas12b-sgRNA-target DNA ternary complex (Complex-A)
Descriptor: C2c1 CRISPR-Cas endonuclease RuvC-like domain-containing protein, MAGNESIUM ION, Non-target DNA strand, ...
Authors:Li, Y, Li, J, Pei, X, Gan, J, Lin, J.
Deposit date:2024-11-14
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Catalytic-state structure of Candidatus Hydrogenedentes Cas12b revealed by cryo-EM studies.
Nucleic Acids Res., 53, 2025
9KLQ
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BU of 9klq by Molmil
Cryo-EM structure of ChCas12b-sgRNA-extended non-target DNA ternary complex (Complex-D)
Descriptor: C2c1 CRISPR-Cas endonuclease RuvC-like domain-containing protein, MAGNESIUM ION, Non-target DNA strand, ...
Authors:Li, Y, Li, J, Pei, X, Gan, J, Lin, J.
Deposit date:2024-11-14
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Catalytic-state structure of Candidatus Hydrogenedentes Cas12b revealed by cryo-EM studies.
Nucleic Acids Res., 53, 2025
5F59
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BU of 5f59 by Molmil
The crystal structure of MLL3 SET domain
Descriptor: Histone-lysine N-methyltransferase 2C, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-04
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5F5E
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BU of 5f5e by Molmil
The Crystal Structure of MLL1 SET domain with N3816I/Q3867L mutation
Descriptor: Histone-lysine N-methyltransferase 2A, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-04
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5F6L
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BU of 5f6l by Molmil
The crystal structure of MLL1 (N3861I/Q3867L) in complex with RbBP5 and Ash2L
Descriptor: Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-06
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5F6K
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BU of 5f6k by Molmil
Crystal structure of the MLL3-Ash2L-RbBP5 complex
Descriptor: Histone-lysine N-methyltransferase 2C, Retinoblastoma-binding protein 5, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-06
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.411 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
9L5T
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BU of 9l5t by Molmil
Cryo-EM structure of the thermophile spliceosome (state B*Q2)
Descriptor: Anaphase-promoting complex subunit 4-like WD40 domain-containing protein, CCDC12, Delta(14)-sterol reductase, ...
Authors:Li, Y, Fischer, P, Wang, M, Yuan, R, Meng, W, Luehrmann, R, Lau, B, Hurt, E, Cheng, J.
Deposit date:2024-12-23
Release date:2025-03-12
Last modified:2025-04-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural insights into spliceosome fidelity: DHX35-GPATCH1- mediated rejection of aberrant splicing substrates.
Cell Res., 35, 2025
9L5S
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BU of 9l5s by Molmil
Cryo-EM structure of the thermophile spliceosome (state B*Q1)
Descriptor: Anaphase-promoting complex subunit 4-like WD40 domain-containing protein, CCDC12, Delta(14)-sterol reductase, ...
Authors:Li, Y, Fischer, P, Wang, M, Yuan, R, Meng, W, Luehrmann, R, Lau, B, Hurt, E, Cheng, J.
Deposit date:2024-12-23
Release date:2025-03-12
Last modified:2025-04-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into spliceosome fidelity: DHX35-GPATCH1- mediated rejection of aberrant splicing substrates.
Cell Res., 35, 2025
9L5R
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BU of 9l5r by Molmil
Cryo-EM structure of the thermophile spliceosome (state ILS)
Descriptor: Anaphase-promoting complex subunit 4-like WD40 domain-containing protein, CCDC12, Cell cycle control protein, ...
Authors:Li, Y, Fischer, P, Wang, M, Yuan, R, Meng, W, Luehrmann, R, Lau, B, Hurt, E, Cheng, J.
Deposit date:2024-12-23
Release date:2025-03-12
Last modified:2025-04-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural insights into spliceosome fidelity: DHX35-GPATCH1- mediated rejection of aberrant splicing substrates.
Cell Res., 35, 2025
3ETL
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BU of 3etl by Molmil
RadA recombinase from Methanococcus maripaludis in complex with AMPPNP
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2008-10-08
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis.
Acta Crystallogr.,Sect.D, 65, 2009
3EWA
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BU of 3ewa by Molmil
RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and ammonium ions
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2008-10-14
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis.
Acta Crystallogr.,Sect.D, 65, 2009
3EW9
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BU of 3ew9 by Molmil
RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and potassium ions
Descriptor: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Li, Y, He, Y, Luo, Y.
Deposit date:2008-10-14
Release date:2009-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis.
Acta Crystallogr.,Sect.D, 65, 2009
5KTQ
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BU of 5ktq by Molmil
LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, PROTEIN (DNA POLYMERASE I)
Authors:Li, Y, Kong, Y, Korolev, S, Waksman, G.
Deposit date:1998-09-22
Release date:1998-09-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates.
Protein Sci., 7, 1998
1HQR
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BU of 1hqr by Molmil
CRYSTAL STRUCTURE OF A SUPERANTIGEN BOUND TO THE HIGH-AFFINITY, ZINC-DEPENDENT SITE ON MHC CLASS II
Descriptor: HLA-DR ALPHA CHAIN, HLA-DR BETA CHAIN, MYELIN BASIC PROTEIN, ...
Authors:Li, Y, Li, H, Dimasi, N, Schlievert, P, Mariuzza, R.
Deposit date:2000-12-19
Release date:2001-01-03
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a superantigen bound to the high-affinity, zinc-dependent site on MHC class II.
Immunity, 14, 2001
9NNR
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BU of 9nnr by Molmil
GNAT family acetyltransferase EryM in complex with Acetyl-CoA
Descriptor: ACETYL COENZYME *A, GLYCEROL, Lysine N-acyltransferase MbtK, ...
Authors:Li, Y, Smith, J.
Deposit date:2025-03-06
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Redefining the role of the EryM acetyltransferase in natural product biosynthetic pathways.
Structure, 2025
9OA7
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BU of 9oa7 by Molmil
GNAT family acetyltransferase EryM SeMet
Descriptor: GLYCEROL, Lysine N-acyltransferase MbtK, MAGNESIUM ION, ...
Authors:Li, Y, Smith, J.
Deposit date:2025-04-19
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Redefining the role of the EryM acetyltransferase in natural product biosynthetic pathways.
Structure, 2025
9NNQ
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BU of 9nnq by Molmil
GNAT family acetyltransferase EryM
Descriptor: GLYCEROL, Lysine N-acyltransferase MbtK, MAGNESIUM ION, ...
Authors:Li, Y, Smith, J.
Deposit date:2025-03-06
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Redefining the role of the EryM acetyltransferase in natural product biosynthetic pathways.
Structure, 2025
9NNS
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BU of 9nns by Molmil
Flavin-dependent N5-ornithine monooxygenase EtcB
Descriptor: ADENOSINE-5'-DIPHOSPHATE, L-lysine N6-monooxygenase MbtG
Authors:Li, Y, Liu, X, Smith, J.
Deposit date:2025-03-06
Release date:2025-05-28
Last modified:2025-06-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Redefining the role of the EryM acetyltransferase in natural product biosynthetic pathways.
Structure, 2025
6QNX
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BU of 6qnx by Molmil
Structure of the SA2/SCC1/CTCF complex
Descriptor: 64-kDa C-terminal product, Cohesin subunit SA-2, Transcriptional repressor CTCF
Authors:Li, Y, Muir, K.W, Panne, D.
Deposit date:2019-02-12
Release date:2020-01-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis for cohesin-CTCF-anchored loops.
Nature, 578, 2020
7F68
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BU of 7f68 by Molmil
Crystal structure of N-ras S89D
Descriptor: GTPase NRas, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Li, Y, Sun, Q.
Deposit date:2021-06-24
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal structure of N-ras S89D
To Be Published
7SOY
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BU of 7soy by Molmil
The structure of the PP2A-B56gamma1 holoenzyme-PME-1 complex
Descriptor: Isoform Gamma-1 of Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform, Protein phosphatase methylesterase 1, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, ...
Authors:Li, Y, Balakrishnan, V.K, Rowse, M, Novikova, I.V, Xing, Y.
Deposit date:2021-11-01
Release date:2022-08-31
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Coupling to short linear motifs creates versatile PME-1 activities in PP2A holoenzyme demethylation and inhibition.
Elife, 11, 2022

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