1EKA
| NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | Descriptor: | RNA (5'-R(*GP*AP*GP*UP*GP*CP*UP*C)-3') | Authors: | Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H. | Deposit date: | 2000-03-07 | Release date: | 2000-11-13 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2). Biochemistry, 39, 2000
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1EKD
| NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | Descriptor: | RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3') | Authors: | Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H. | Deposit date: | 2000-03-07 | Release date: | 2000-11-13 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2). Biochemistry, 39, 2000
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1EEK
| SOLUTION STRUCTURE OF A NONPOLAR, NON HYDROGEN BONDED BASE PAIR SURROGATE IN DNA. | Descriptor: | 5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*AP*CP*(MBZ)P*AP*TP*GP*CP*G)-3' | Authors: | Kool, E.T, Krugh, T.R, Guckian, K.M. | Deposit date: | 2000-02-01 | Release date: | 2000-02-16 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA J.Am.Chem.Soc., 122, 2000
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1MV2
| The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MV6
| The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MV1
| The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MUV
| Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Schroeder, S.J, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of
5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1TUT
| J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns | Descriptor: | 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3' | Authors: | Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H. | Deposit date: | 2004-06-25 | Release date: | 2004-12-28 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns. Biochemistry, 43, 2004
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1XV0
| Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2004-10-26 | Release date: | 2004-11-09 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs Biochemistry, 44, 2005
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1BW7
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1NTS
| 5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl | Descriptor: | 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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1NTT
| 5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl | Descriptor: | 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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1NTQ
| 5'(dCCUCCUU)3':3'(rAGGAGGAAA)5' | Descriptor: | 5'-D(*CP*CP*UP*CP*CP*UP*U)-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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2DD1
| Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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2DD3
| An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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2DD2
| An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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1HS1
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1HS3
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1HS8
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1HS4
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1HS2
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2O81
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2O83
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2IRN
| The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2 | Descriptor: | 5'-R(P*GP*CP*UP*GP*AP*GP*GP*CP*U)-3' | Authors: | Tolbert, B.S. | Deposit date: | 2006-10-15 | Release date: | 2007-02-20 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,). Biochemistry, 46, 2007
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2IRO
| The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2 | Descriptor: | 5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3' | Authors: | Tolbert, B.S. | Deposit date: | 2006-10-16 | Release date: | 2007-02-20 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,). Biochemistry, 46, 2007
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