Author results

3BNA
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REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L., Fratini, A.V., Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
4BNA
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REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L., Fratini, A.V., Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
5BNA
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THE PRIMARY MODE OF BINDING OF CISPLATIN TO A B-DNA DODECAMER: C-G-C-G-A-A-T-T-C-G-C-G
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM TRIAMINE ION
Authors:Wing, R.M., Pjura, P., Drew, H.R., Dickerson, R.E.
Deposit date:1983-08-22
Release date:1983-11-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G
EMBO J., 3, 1984
6BNA
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BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
Authors:Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P., Dickerson, R.E.
Deposit date:1984-08-30
Release date:1984-10-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
8BNA
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BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, MAGNESIUM ION
Authors:Pjura, P.E., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1986-08-29
Release date:1987-01-15
Last modified:2014-07-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
3DNB
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HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Descriptor:DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G., Dickerson, R.E.
Deposit date:1988-03-18
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
1DNE
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MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Coll, M., Aymami, J., Van Der Marel, G.A., Van Boom, J.H., Rich, A., Wang, A.H.-J.
Deposit date:1988-09-14
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment.
Biochemistry, 28, 1989
9BNA
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RE-REFINEMENT OF THE B-DODECAMER D(CGCGAATTCGCG) WITH A COMPARATIVE ANALYSIS OF THE SOLVENT IN IT AND IN THE Z-HEXAMER D(5BRCG5BRCG5BRCG)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Westhof, E.
Deposit date:1990-02-01
Release date:1991-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG).
J.Biomol.Struct.Dyn., 5, 1987
1D29
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CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG
Descriptor:DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Authors:Larsen, T.A., Kopka, M.L., Dickerson, R.E.
Deposit date:1991-05-23
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.
Biochemistry, 30, 1991
1D60
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1D61
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THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), CACODYLATE ION, CALCIUM ION
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1D62
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THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH
Descriptor:5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3'
Authors:Lipanov, A., Kopka, M.L., Kaczor-Grzeskowiak, M., Dickerson, R.E.
Deposit date:1992-03-01
Release date:1993-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
126D
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CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
274D
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CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3'), ANTHRAMYCIN
Authors:Kopka, M.L., Goodsell, D.S., Baikalov, I., Grzeskowiak, K., Cascio, D., Dickerson, R.E.
Deposit date:1994-04-28
Release date:1994-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry, 33, 1994
101D
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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
Authors:Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
Deposit date:1994-12-14
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
1LEX
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1LEY
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
307D
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STRUCTURE OF A DNA ANALOG OF THE PRIMER FOR HIV-1 RT SECOND STRAND SYNTHESIS
Descriptor:DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
Authors:Han, G.W., Kopka, M.L., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1997-01-07
Release date:1997-01-27
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
334D
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DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'), DIIMIDAZOLE LEXITROPSIN, CALCIUM ION
Authors:Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
1VTJ
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MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 1
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Coll, M., Aymami, J., Van Der Marel, G.A., Van Boom, J.H., Rich, A., Wang, A.H.-J.
Deposit date:1999-09-14
Release date:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Structure of the Netropsin-d(CGCGATATCGCG) Complex: DNA Conformation in an Alternating AT Segment
Biochemistry, 28, 1989
1DC0
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CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
Authors:Ng, H.L., Kopka, M.L., Dickerson, R.E.
Deposit date:1999-11-03
Release date:2000-03-06
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
1FK0
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, DECANOIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-08
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK1
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH LAURIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NON-SPECIFIC LIPID TRANSFER PROTEIN, LAURIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK2
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH MYRISTIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, MYRISTIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
1FK3
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STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH PALMITOLEIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY
Descriptor:NONSPECIFIC LIPID-TRANSFER PROTEIN, PALMITOLEIC ACID, FORMIC ACID
Authors:Han, G.W., Lee, J.Y., Song, H.K., Shin, D.H., Suh, S.W.
Deposit date:2000-08-09
Release date:2001-06-06
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
J.Mol.Biol., 308, 2001
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