Author results

1D3L
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D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.
Descriptor:PROTEIN (INTERCELLULAR ADHESION MOLECULE-1)
Authors:Bella, J., Kolatkar, P.R., Rossmann, M.G.
Deposit date:1999-09-29
Release date:1999-12-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
1IAM
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STRUCTURE OF THE TWO AMINO-TERMINAL DOMAINS OF HUMAN INTERCELLULAR ADHESION MOLECULE-1, ICAM-1
Descriptor:INTERCELLULAR ADHESION MOLECULE-1, N-ACETYL-D-GLUCOSAMINE
Authors:Bella, J., Kolatkar, P.R., Marlor, C., Greve, J.M., Rossmann, M.G.
Deposit date:1998-02-22
Release date:1998-04-29
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the two amino-terminal domains of human ICAM-1 suggests how it functions as a rhinovirus receptor and as an LFA-1 integrin ligand.
Proc.Natl.Acad.Sci.USA, 95, 1998
1F94
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THE 0.97 RESOLUTION STRUCTURE OF BUCANDIN, A NOVEL TOXIN ISOLATED FROM THE MALAYAN KRAIT
Descriptor:BUCANDIN
Authors:Kuhn, P., Deacon, A.M., Comoso, S., Rajaseger, G., Kini, R.M., Uson, I., Kolatkar, P.R.
Deposit date:2000-07-06
Release date:2000-07-26
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:The atomic resolution structure of bucandin, a novel toxin isolated from the Malayan krait, determined by direct methods.
Acta Crystallogr.,Sect.D, 56, 2000
1OSY
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CRYSTAL STRUCTURE OF FIP-FVE FUNGAL IMMUNOMODULATORY PROTEIN
Descriptor:IMMUNOMODULATORY PROTEIN FIP-FVE, BROMIDE ION
Authors:Palasingam, P., Joseph, J.S., Seow, S.V., Shai, V., Robinson, H., Chua, K.Y., Kolatkar, P.R.
Deposit date:2003-03-20
Release date:2003-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A 1.7A structure of Fve, a member of the new fungal immunomodulatory protein family
J.Mol.Biol., 332, 2003
1SB2
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HIGH RESOLUTION STRUCTURE DETERMINATION OF RHODOCETIN
Descriptor:Rhodocetin alpha subunit, Rhodocetin beta subunit
Authors:Paaventhan, P., Kong, C.G., Joseph, J.S., Chung, M.C.M., Kolatkar, P.R.
Deposit date:2004-02-10
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of rhodocetin reveals noncovalently bound heterodimer interface
Protein Sci., 14, 2005
2VI6
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CRYSTAL STRUCTURE OF THE NANOG HOMEODOMAIN
Descriptor:HOMEOBOX PROTEIN NANOG
Authors:Jauch, R., Ng, C.K.L., Saitakendu, K.S., Stevens, R.C., Kolatkar, P.R.
Deposit date:2007-11-28
Release date:2008-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and DNA Binding of the Homeodomain of the Stem Cell Transcription Factor Nanog.
J.Mol.Biol., 376, 2008
2XSD
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CRYSTAL STRUCTURE OF THE DIMERIC OCT-6 (POU3F1) POU DOMAIN BOUND TO PALINDROMIC MORE DNA
Descriptor:5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3', 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3', POU DOMAIN, ...
Authors:Jauch, R., Choo, S.H., Ng, C.K.L., Kolatkar, P.R.
Deposit date:2010-09-28
Release date:2010-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA.
Proteins, 79, 2011
3F27
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STRUCTURE OF SOX17 BOUND TO DNA
Descriptor:DNA (5'-D(*DGP*DTP*DCP*DTP*DCP*DTP*DAP*DTP*DTP*DGP*DTP*DCP*DCP*DTP*DGP*DG)-3'), DNA (5'-D(*DCP*DCP*DAP*DGP*DGP*DAP*DCP*DAP*DAP*DTP*DAP*DGP*DAP*DGP*DAP*DC)-3'), Transcription factor SOX-17
Authors:Palasingam, P., Jauch, R., Ng, C.K.L., Kolatkar, P.R.
Deposit date:2008-10-29
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Structure of Sox17 Bound to DNA Reveals a Conserved Bending Topology but Selective Protein Interaction Platforms
J.Mol.Biol., 388, 2009
3KMP
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CRYSTAL STRUCTURE OF SMAD1-MH1/DNA COMPLEX
Descriptor:SMAD1-MH1, 5'-D(P*AP*TP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*AP*TP*A)-3', 5'-D(P*GP*TP*AP*TP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*A)-3', ...
Authors:Baburajendran, N., Palasingam, P., Narasimhan, K., Jauch, R., Kolatkar, P.R.
Deposit date:2009-11-11
Release date:2010-02-23
Last modified:2013-12-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-beta effectors.
Nucleic Acids Res., 38, 2010
3QSV
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STRUCTURAL BASIS FOR DNA RECOGNITION BY CONSTITUTIVE SMAD4 MH1 DIMERS
Descriptor:Mothers against decapentaplegic homolog 4, DNA (5'-D(P*TP*GP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*CP*A)-3'), ZINC ION
Authors:Baburajendran, N., Jauch, R., Zhen, C.T.Y., Kolatkar, P.R.
Deposit date:2011-02-22
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.708 Å)
Cite:Structural basis for DNA recognition by constitutive Smad4 MH1 dimers
To be Published
3U2B
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STRUCTURE OF THE SOX4 HMG DOMAIN BOUND TO DNA
Descriptor:DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*GP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3'), Transcription factor SOX-4
Authors:Jauch, R., Ng, C.K.L., Kolatkar, P.R.
Deposit date:2011-10-03
Release date:2011-12-28
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:The crystal structure of the Sox4 HMG domain-DNA complex suggests a mechanism for positional interdependence in DNA recognition
Biochem.J., 443, 2012
4AYA
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CRYSTAL STRUCTURE OF ID2 HLH HOMODIMER AT 2.1A RESOLUTION
Descriptor:DNA-BINDING PROTEIN INHIBITOR ID-2, POTASSIUM ION, ACETATE ION
Authors:Wong, M.V., Jiang, S., Palasingam, P., Kolatkar, P.R.
Deposit date:2012-06-19
Release date:2012-11-14
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:A Divalent Ion is Crucial in the Structure and Dominant-Negative Function of Id Proteins, a Class of Helix-Loop-Helix Transcription Regulators.
Plos One, 7, 2012
4E6S
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CRYSTAL STRUCTURE OF THE SCAN DOMAIN FROM MOUSE ZFP206
Descriptor:Zinc finger and SCAN domain-containing protein 10
Authors:Liang, Y., Choo, S.H., Rossbach, M., Baburajendran, N., Palasingam, P., Kolatkar, P.R.
Deposit date:2012-03-15
Release date:2012-05-02
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal optimization and preliminary diffraction data analysis of the SCAN domain of Zfp206.
Acta Crystallogr.,Sect.F, 68, 2012
4S2Q
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CRYSTAL STRUCTURE OF HMG DOMAIN OF THE CHONDROGENESIS MASTER REGULATOR, SOX9 IN COMPLEX WITH CHIP-SEQ IDENTIFIED DNA ELEMENT
Descriptor:DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP*CP*TP*G)-3'), DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP*CP*TP*G)-3'), Transcription factor SOX-9
Authors:Vivekanandan, S., Moovarkumudalvan, B., Lescar, J., Kolatkar, P.R.
Deposit date:2015-01-21
Release date:2016-02-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element
To be Published
1ITH
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STRUCTURE DETERMINATION AND REFINEMENT OF HOMOTETRAMERIC HEMOGLOBIN FROM URECHIS CAUPO AT 2.5 ANGSTROMS RESOLUTION
Descriptor:HEMOGLOBIN (CYANO MET), CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hackert, M., Kolatkar, P., Ernst, S.R., Ogata, C.M., Hendrickson, W.A., Merritt, E.A., Phizackerley, R.P.
Deposit date:1991-12-03
Release date:1993-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure determination and refinement of homotetrameric hemoglobin from Urechis caupo at 2.5 A resolution.
Acta Crystallogr.,Sect.B, 48, 1992
1D3E
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CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY
Descriptor:PROTEIN (INTERCELLULAR ADHESION MOLECULE-1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1), PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2), ...
Authors:Bella, J., Rossmann, M.G.
Deposit date:1999-09-29
Release date:2000-01-19
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (28 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
1D3I
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CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY
Descriptor:PROTEIN (INTERCELLULAR ADHESION MOLECULE-1), PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1), PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2), ...
Authors:Bella, J., Rossmann, M.G.
Deposit date:1999-09-29
Release date:2000-01-19
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.
EMBO J., 18, 1999
4Y60
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STRUCTURE OF SOX18-HMG/PROX1-DNA
Descriptor:Transcription factor SOX-18, DNA (5'-D(*CP*AP*CP*TP*AP*GP*CP*AP*TP*TP*GP*TP*CP*TP*GP*GP*G)-3'), DNA (5'-D(*GP*CP*CP*CP*AP*GP*AP*CP*AP*AP*TP*GP*CP*TP*AP*GP*T)-3')
Authors:Narasimhan, K., Prokoph, N., Kolatkar, P., Robinson, H., Jauch, R.
Deposit date:2015-02-12
Release date:2016-03-02
Last modified:2016-04-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction.
Nucleic Acids Res., 44, 2016
1AYM
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HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION
Descriptor:HUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION, LAURIC ACID, ...
Authors:Hadfield, A.T., Rossmann, M.G.
Deposit date:1997-11-06
Release date:1998-01-21
Last modified:2018-07-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The refined structure of human rhinovirus 16 at 2.15 A resolution: implications for the viral life cycle.
Structure, 5, 1997
1AYN
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HUMAN RHINOVIRUS 16 COAT PROTEIN
Descriptor:HUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION, LAURIC ACID, ...
Authors:Hadfield, A.T., Oliveira, M.A., Zhao, R., Rossmann, M.G.
Deposit date:1997-11-06
Release date:1998-01-21
Last modified:2012-02-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of human rhinovirus 16.
Structure, 1, 1993
1C8M
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REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS
Descriptor:HUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION, 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE
Authors:Chakravarty, S., Bator, C.M., Pevear, D.C., Diana, G.D., Rossmann, M.G.
Deposit date:2000-05-26
Release date:2000-11-22
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:THE REFINED STRUCTURE OF A PICORNAVIRUS INHIBITOR CURRENTLY IN CLINICAL TRIALS, WHEN COMPLEXED WITH HUMAN RHINOVIRUS 16
to be published
1IJC
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SOLUTION STRUCTURE OF BUCANDIN, A NEUROTOXIN FROM THE VENOM OF THE MALAYAN KRAIT
Descriptor:bucandin
Authors:Torres, A.M., Kini, R.M., Nirthanan, S., Kuchel, P.W.
Deposit date:2001-04-25
Release date:2001-12-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of bucandin, a neurotoxin from the venom of the Malayan krait (Bungarus candidus).
Biochem.J., 360, 2001
1QJU
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HUMAN RHINOVIRUS 16 COAT PROTEIN IN COMPLEX WITH ANTIVIRAL COMPOUND VP61209
Descriptor:PROTEIN VP1, PROTEIN VP2, PROTEIN VP3, ...
Authors:Hadfield, A.T., Minor, I., Diana, G.D., Rossmann, M.G.
Deposit date:1999-07-05
Release date:1999-07-20
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of Three Structurally Related Antiviral Compounds in Complex with Human Rhinovirus 16
Proc.Natl.Acad.Sci.USA, 96, 1999
4A3N
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CRYSTAL STRUCTURE OF HMG-BOX OF HUMAN SOX17
Descriptor:TRANSCRIPTION FACTOR SOX-17, ZINC ION
Authors:Gao, N., Gao, H., Qian, H., Si, S., Xie, Y.
Deposit date:2011-10-01
Release date:2011-12-28
Last modified:2013-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis of Human Transcription Factor Sry-Related Box 17 Binding to DNA.
Protein Pept.Lett., 20, 2013