Author results

1J1F
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP
Descriptor:RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP
Descriptor:Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1X0T
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CRYSTAL STRUCTURE OF RIBONUCLEASE P PROTEIN PH1601P FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Ribonuclease P protein component 4, ZINC ION
Authors:Kakuta, Y., Ishimatsu, I., Numata, T., Kimura, K., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2005-03-29
Release date:2005-11-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1UCG
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CRYSTAL STRUCTURE OF RIBONUCLEASE MC1 N71T MUTANT
Descriptor:Ribonuclease MC, MANGANESE (II) ION
Authors:Suzuki, A., Numata, T., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2003-04-14
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
1V9H
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT Y101A IN COMPLEX WITH 5'-UMP
Descriptor:Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
Authors:Kimura, K., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2004-01-26
Release date:2004-10-05
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
2ZAE
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CRYSTAL STRUCTURE OF PROTEIN PH1601P IN COMPLEX WITH PROTEIN PH1771P OF ARCHAEAL RIBONUCLEASE P FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Ribonuclease P protein component 1, Ribonuclease P protein component 4, NITRATE ION, ...
Authors:Honda, T., Kakuta, Y., Kimura, M.
Deposit date:2007-10-04
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of an archaeal homolog of the human protein complex Rpp21-Rpp29 that is a key core component for the assembly of active ribonuclease P.
J.Mol.Biol., 384, 2008
1WN5
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH CACODYLIC ACID
Descriptor:Blasticidin-S deaminase, ZINC ION, CACODYLATE ION
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1WN6
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH TETRAHEDRAL INTERMEDIATE OF BLASTICIDIN S
Descriptor:Blasticidin-S deaminase, ZINC ION, 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID, ...
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2004-07-27
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3G
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD)
Descriptor:Blasticidin-S deaminase, ZINC ION, TREHALOSE
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3H
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) COMPLEXED WITH DEAMINOHYDROXY BLASTICIDIN S
Descriptor:Blasticidin-S deaminase, ZINC ION, 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3I
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) MUTANT E56Q COMPLEXED WITH SUBSTRATE
Descriptor:Blasticidin-S deaminase, BLASTICIDIN S, ZINC ION, ...
Authors:Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
2Z3J
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CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) R90K MUTANT
Descriptor:Blasticidin-S deaminase, ZINC ION, CACODYLATE ION, ...
Authors:Teh, A.H., Kumasaka, T., Yamamoto, M., Furuichi, M., Nakasako, M., Kimura, M., Yamaguchi, I., Ueki, T.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
3VSM
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
3VSN
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THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN
Descriptor:Occlusion-derived virus envelope protein E66, IODIDE ION, GLYCEROL
Authors:Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y.
Deposit date:2012-04-27
Release date:2013-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
2ZWI
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CRYSTAL STRUCTURE OF ALPHA/BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE FROM A LUMINOUS MARINE BACTERIUM, PHOTOBACTERIUM PHOSPHOREUM
Descriptor:Alpha-/beta-galactoside alpha-2,3-sialyltransferase, CYTIDINE-5'-MONOPHOSPHATE, ZINC ION, ...
Authors:Iwatani, T., Okino, N., Sakakura, M., Kajiwara, H., Ichikawa, M., Takakura, Y., Kimura, M., Ito, M., Yamamoto, T., Kakuta, Y.
Deposit date:2008-12-05
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of alpha/beta-galactoside alpha2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum
Febs Lett., 583, 2009
1IQ4
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5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
Descriptor:50S RIBOSOMAL PROTEIN L5
Authors:Nakashima, T., Yao, M., Kawamura, S., Iwasaki, K., Kimura, M., Tanaka, I.
Deposit date:2001-06-13
Release date:2001-06-27
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
1IQV
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CRYSTAL STRUCTURE ANALYSIS OF THE ARCHAEBACTERIAL RIBOSOMAL PROTEIN S7
Descriptor:RIBOSOMAL PROTEIN S7
Authors:Hosaka, H., Yao, M., Kimura, M., Tanaka, I.
Deposit date:2001-08-07
Release date:2001-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
J.Biochem.(Tokyo), 130, 2001
1IZ6
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CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR 5A FROM PYROCOCCUS HORIKOSHII
Descriptor:Initiation Factor 5A
Authors:Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., Kimura, M.
Deposit date:2002-09-25
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
1J3A
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CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L13 FROM PYROCOCCUS HORIKOSHII
Descriptor:50S ribosomal protein L13P
Authors:Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.
Deposit date:2003-01-21
Release date:2003-02-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
1UCA
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CRYSTAL STRUCTURE OF THE RIBONUCLEASE MC1 FROM BITTER GOURD SEEDS COMPLEXED WITH 2'-UMP
Descriptor:Ribonuclease MC, PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER
Authors:Suzuki, A., Yao, M., Tanaka, I., Numata, T., Kikukawa, S., Yamasaki, N., Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1UCC
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CRYSTAL STRUCTURE OF THE RIBONUCLEASE MC1 FROM BITTER GOURD SEEDS COMPLEXED WITH 3'-UMP.
Descriptor:Ribonuclease MC, 3'-URIDINEMONOPHOSPHATE
Authors:Suzuki, A., Yao, M., Tanaka, I., Numata, T., Kikukawa, S., Yamasaki, N., Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1UCD
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CRYSTAL STRUCTURE OF RIBONUCLEASE MC1 FROM BITTER GOURD SEEDS COMPLEXED WITH 5'-UMP
Descriptor:Ribonuclease MC, URIDINE-5'-MONOPHOSPHATE, URACIL
Authors:Suzuki, A., Numata, T., Yao, M., Kimura, M., Tanaka, I.
Deposit date:2003-04-10
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP
To be published
1V77
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CRYSTAL STRUCTURE OF THE PH1877 PROTEIN
Descriptor:hypothetical protein PH1877
Authors:Takagi, H., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2003-12-12
Release date:2004-08-31
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
1VB5
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CRYSTAL STRUCTURE ANALYSIS OF THE PYROCOCCUS HORIKOSHII OT3 TRANSLATION INITIATION FACTOR EIF-2B
Descriptor:translation initiation factor eIF-2B
Authors:Kakuta, Y., Tahara, M., Maetani, S., Kimura, M.
Deposit date:2004-02-22
Release date:2004-12-07
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B
Biochem.Biophys.Res.Commun., 319, 2004
1WMI
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CRYSTAL STRUCTURE OF ARCHAEAL RELE-RELB COMPLEX FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:hypothetical protein PHS013, hypothetical protein PHS014
Authors:Takagi, H., Kakuta, Y., Kamachi, R., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2004-07-09
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
Nat.Struct.Mol.Biol., 12, 2005
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