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6A6M
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BU of 6a6m by Molmil
Crystal structure of an outward-open nucleotide-bound state of the eukaryotic ABC multidrug transporter CmABCB1
Descriptor: ATP-binding cassette, sub-family B, member 1, ...
Authors:Kato, H, Nakatsu, T, Kodan, A.
Deposit date:2018-06-28
Release date:2019-02-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inward- and outward-facing X-ray crystal structures of homodimeric P-glycoprotein CmABCB1.
Nat Commun, 10, 2019
6A6N
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BU of 6a6n by Molmil
Crystal structure of an inward-open apo state of the eukaryotic ABC multidrug transporter CmABCB1
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP-binding cassette, sub-family B, ...
Authors:Kato, H, Nakatsu, T, Kodan, A.
Deposit date:2018-06-28
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Inward- and outward-facing X-ray crystal structures of homodimeric P-glycoprotein CmABCB1.
Nat Commun, 10, 2019
1GSH
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BU of 1gsh by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
Descriptor: GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K, Kato, H, Yamaguchi, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-05-16
Release date:1996-07-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
1GSA
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BU of 1gsa by Molmil
STRUCTURE OF GLUTATHIONE SYNTHETASE COMPLEXED WITH ADP AND GLUTATHIONE
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLUTATHIONE, GLUTATHIONE SYNTHETASE, ...
Authors:Hara, T, Kato, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-06-08
Release date:1996-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:A pseudo-michaelis quaternary complex in the reverse reaction of a ligase: structure of Escherichia coli B glutathione synthetase complexed with ADP, glutathione, and sulfate at 2.0 A resolution.
Biochemistry, 35, 1996
2AE2
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BU of 2ae2 by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADP+ AND PSEUDOTROPINE
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTEIN (TROPINONE REDUCTASE-II), PSEUDOTROPINE
Authors:Yamashita, A, Kato, H, Wakatsuki, S, Tomizaki, T, Nakatsu, T, Nakajima, K, Hashimoto, T, Yamada, Y, Oda, J.
Deposit date:1999-01-26
Release date:1999-02-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis.
Biochemistry, 38, 1999
2GLT
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BU of 2glt by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor: GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K, Yamaguchi, H, Kato, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
2AE1
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BU of 2ae1 by Molmil
TROPINONE REDUCTASE-II
Descriptor: TROPINONE REDUCTASE-II
Authors:Nakajima, K, Yamashita, A, Akama, H, Nakatsu, T, Kato, H, Hashimoto, T, Oda, J, Yamada, Y.
Deposit date:1997-10-27
Release date:1998-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of two tropinone reductases: different reaction stereospecificities in the same protein fold.
Proc.Natl.Acad.Sci.USA, 95, 1998
1GLV
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BU of 1glv by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION
Descriptor: GLUTATHIONE SYNTHASE
Authors:Yamaguchi, H, Kato, H, Tanaka, T, Katsube, Y.
Deposit date:1993-03-12
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 A resolution.
J.Mol.Biol., 229, 1993
11AS
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BU of 11as by Molmil
ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE
Descriptor: ASPARAGINE, ASPARAGINE SYNTHETASE
Authors:Nakatsu, T, Kato, H, Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
12AS
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BU of 12as by Molmil
ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE AND AMP
Descriptor: ADENOSINE MONOPHOSPHATE, ASPARAGINE, ASPARAGINE SYNTHETASE
Authors:Nakatsu, T, Kato, H, Oda, J.
Deposit date:1997-12-02
Release date:1998-12-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase.
Nat.Struct.Biol., 5, 1998
1AUN
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BU of 1aun by Molmil
PATHOGENESIS-RELATED PROTEIN 5D FROM NICOTIANA TABACUM
Descriptor: PR-5D
Authors:Koiwa, H, Kato, H, Nakatsu, T, Oda, J, Yamada, Y, Sato, F.
Deposit date:1997-08-29
Release date:1998-03-04
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins.
J.Mol.Biol., 286, 1999
6U9I
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BU of 6u9i by Molmil
Crystal structure of BvnE pinacolase from Penicillium brevicompactum
Descriptor: BvnE, DI(HYDROXYETHYL)ETHER, GLYCEROL
Authors:Ye, Y, Du, L, Zhang, X, Newmister, S.A, McCauley, M, Alegre-Requena, J.V, Zhang, W, Mu, S, Minami, A, Fraley, A.E, Adrover-Castellano, M.L, Carney, N, Shende, V.V, Oikawa, H, Kato, H, Tsukamoto, S, Paton, R.S, Williams, R.M, Sherman, D.H, Li, S.
Deposit date:2019-09-09
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Fungal-derived brevianamide assembly by a stereoselective semipinacolase.
Nat Catal, 3, 2020
1AE1
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BU of 1ae1 by Molmil
TROPINONE REDUCTASE-I COMPLEX WITH NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-I
Authors:Nakajima, K, Yamashita, A, Akama, H, Nakatsu, T, Kato, H, Hashimoto, T, Oda, J, Yamada, Y.
Deposit date:1997-10-23
Release date:1998-11-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of two tropinone reductases: different reaction stereospecificities in the same protein fold.
Proc.Natl.Acad.Sci.USA, 95, 1998
1IS1
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BU of 1is1 by Molmil
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
Descriptor: RIBOSOME RECYCLING FACTOR
Authors:Nakano, H, Yamaichi, Y, Uchiyama, S, Yoshida, T, Nishina, K, Kato, H, Ohkubo, T, Honda, T, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-05
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
J.BIOL.CHEM., 278, 2003
1IPE
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BU of 1ipe by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
Authors:Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IPF
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BU of 1ipf by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE
Descriptor: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
Authors:Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-05-09
Release date:2003-06-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
3EBL
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BU of 3ebl by Molmil
Crystal Structure of Rice GID1 complexed with GA4
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A4, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
1V4G
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BU of 1v4g by Molmil
Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B
Descriptor: Glutamate--cysteine ligase
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2003-11-13
Release date:2004-10-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VA6
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BU of 1va6 by Molmil
Crystal structure of Gamma-glutamylcysteine synthetase from Escherichia Coli B complexed with Transition-state analogue
Descriptor: (2S)-2-AMINO-4-[[(2R)-2-CARBOXYBUTYL](PHOSPHONO)SULFONIMIDOYL]BUTANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, Glutamate--cysteine ligase, ...
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2004-02-12
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
3ED1
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BU of 3ed1 by Molmil
Crystal Structure of Rice GID1 complexed with GA3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A3, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-09-02
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
1K5C
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BU of 1k5c by Molmil
Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-10-10
Release date:2002-06-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1KCD
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BU of 1kcd by Molmil
Endopolygalacturonase I from Stereum purpureum complexed with two galacturonate at 1.15 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1KCC
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BU of 1kcc by Molmil
Endopolygalacturonase I from Stereum purpureum complexed with a galacturonate at 1.00 A resolution.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ENDOPOLYGALACTURONASE, ...
Authors:Shimizu, T, Nakatsu, T, Miyairi, K, Okuno, T, Kato, H.
Deposit date:2001-11-08
Release date:2002-06-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution.
Biochemistry, 41, 2002
1VBH
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BU of 1vbh by Molmil
Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize
Descriptor: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, SULFATE ION, ...
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBG
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BU of 1vbg by Molmil
Pyruvate Phosphate Dikinase from Maize
Descriptor: MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005

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