Author results

5GQC
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, LIGAND-FREE FORM
Descriptor:Lacto-N-biosidase, SODIUM ION, CALCIUM ION
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQF
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, LACTO-N-BIOSE COMPLEX
Descriptor:Lacto-N-biosidase, CALCIUM ION, BETA-D-GALACTOSE, ...
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
5GQG
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE LNBX FROM BIFIDOBACTERIUM LONGUM SUBSP. LONGUM, GALACTO-N-BIOSE COMPLEX
Descriptor:Lacto-N-biosidase, CALCIUM ION, BETA-D-GALACTOSE, ...
Authors:Yamada, C., Arakawa, T., Katayama, T., Fushinobu, S.
Deposit date:2016-08-07
Release date:2017-04-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
Cell Chem Biol, 24, 2017
4H04
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LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM
Descriptor:Lacto-N-biosidase, N-ACETYL-D-GLUCOSAMINE, BETA-D-GALACTOSE, ...
Authors:Ito, T., Katayama, T., Wada, J., Suzuki, R., Ashida, H., Wakagi, T., Yamamoto, K., Fushinobu, S.
Deposit date:2012-09-07
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
3AHC
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RESTING FORM OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHD
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH 2-ACETYL-THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHE
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH DIHYDROXYETHYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHF
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PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH INORGANIC PHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, THIAMINE DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHG
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H64A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH A TRICYCLIC RING FORM OF THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-[(9aR)-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl]ethyl trihydrogen diphosphate, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHH
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H142A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHI
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H320A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE COMPLEXED WITH ACETYL THIAMINE DIPHOSPHATE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, 2-ACETYL-THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
3AHJ
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H553A MUTANT OF PHOSPHOKETOLASE FROM BIFIDOBACTERIUM BREVE
Descriptor:Xylulose 5-phosphate/fructose 6-phosphate phosphoketolase, MAGNESIUM ION, THIAMINE DIPHOSPHATE, ...
Authors:Suzuki, R., Katayama, T., Kim, B.-J., Wakagi, T., Shoun, H., Ashida, H., Yamamoto, K., Fushinobu, S.
Deposit date:2010-04-22
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism
J.Biol.Chem., 285, 2010
4JAW
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CRYSTAL STRUCTURE OF LACTO-N-BIOSIDASE FROM BIFIDOBACTERIUM BIFIDUM COMPLEXED WITH LNB-THIAZOLINE
Descriptor:Lacto-N-biosidase, BETA-D-GALACTOSE, 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, ...
Authors:Ito, T., Katayama, T., Stubbs, K.A., Fushinobu, S.
Deposit date:2013-02-19
Release date:2013-03-20
Last modified:2013-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of a glycoside hydrolase family 20 lacto-N-biosidase from Bifidobacterium bifidum
J.Biol.Chem., 288, 2013
2Z8D
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8E
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH GALACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8F
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THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2ZXQ
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CRYSTAL STRUCTURE OF ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE FROM BIFIDOBACTERIUM LONGUM (ENGBF)
Descriptor:Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Suzuki, R., Katayama, T., Ashida, H., Yamamoto, K., Kitaoka, M., Fushinobu, S.
Deposit date:2009-01-05
Release date:2009-06-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum.
J.Biochem., 2009
3ABZ
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CRYSTAL STRUCTURE OF SE-MET LABELED BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS
Descriptor:Beta-glucosidase I, GLYCEROL
Authors:Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
Deposit date:2009-12-25
Release date:2010-08-11
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
3AC0
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM KLUYVEROMYCES MARXIANUS IN COMPLEX WITH GLUCOSE
Descriptor:Beta-glucosidase I, BETA-D-GLUCOSE
Authors:Yoshida, E., Hidaka, M., Fushinobu, S., Katayama, T., Kumagai, H.
Deposit date:2009-12-25
Release date:2010-08-11
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus.
Biochem.J., 431, 2010
1WOC
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CRYSTAL STRUCTURE OF PRIB
Descriptor:Primosomal replication protein n
Authors:Shioi, S., Ose, T., Maenaka, K., Abe, Y., Kohda, D., Katayama, T., Ueda, T.
Deposit date:2004-08-13
Release date:2005-01-25
Last modified:2012-12-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site
Biochem.Biophys.Res.Commun., 326, 2005
2E0G
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DNAA N-TERMINAL DOMAIN
Descriptor:Chromosomal replication initiator protein dnaA
Authors:Abe, Y., Katayama, T., Ueda, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-07
Release date:2007-05-01
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC
To be Published
2RT6
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BACKBONE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR PRIC N-TERMINAL DOMAIN
Descriptor:Primosomal replication protein N''
Authors:Aramaki, T., Abe, Y., Katayama, T., Ueda, T.
Deposit date:2013-04-24
Release date:2013-08-07
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal domain of a replication restart primosome factor, PriC, in Escherichia coli.
Protein Sci., 2013
2RU8
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DNAT C-TERMINAL DOMAIN
Descriptor:Primosomal protein 1
Authors:Abe, Y., Tani, J., Fujiyama, S., Urabe, M., Sato, K., Aramaki, T., Katayama, T., Ueda, T.
Deposit date:2014-01-29
Release date:2014-10-08
Last modified:2014-10-22
Method:SOLUTION NMR
Cite:Structure and mechanism of the primosome protein DnaT: functional structures for homotrimerization, dissociation of ssDNA from PriB-ssDNA complex and formation of DnaT-ssDNA complex
Febs J., 2014
6HUR
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2'-FUCOSYLLACTOSE AND 3-FUCOSYLLACTOSE BINDING PROTEIN FROM BIFIDOBACTERIUM LONGUM INFANTIS, BOUND WITH 2'-FUCOSYLLACTOSE
Descriptor:ABC transporter substrate-binding protein, 2-(2-METHOXYETHOXY)ETHANOL, ALPHA-L-FUCOSE, ...
Authors:Ejby, M., Abou Hachem, M., Lo Leggio, L., Katayama, T., Sakanaka, M.
Deposit date:2018-10-09
Release date:2019-09-04
Last modified:2019-09-18
Method:X-RAY DIFFRACTION (1.297 Å)
Cite:Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.
Sci Adv, 5, 2019
6KZA
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CRYSTAL STRUCTURE OF THE COMPLEX OF THE INTERACTION DOMAINS OF E. COLI DNAB HELICASE AND DNAC HELICASE LOADER
Descriptor:Replicative DNA helicase, DNA replication protein DnaC
Authors:Nagata, K., Okada, A., Ohtsuka, J., Ohkuri, T., Akama, Y., Sakiyama, Y., Miyazaki, E., Horita, S., Katayama, T., Ueda, T., Tanokura, M.
Deposit date:2019-09-23
Release date:2019-11-20
Last modified:2020-01-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding.
J.Biochem., 167, 2020
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