Author results

1GEH
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CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE)
Descriptor:RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, SULFATE ION
Authors:Kitano, K., Maeda, N., Fukui, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2000-11-13
Release date:2001-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of a Novel-Type Archaeal Rubisco with Pentagonal Symmetry
Structure, 9, 2001
1MGT
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CRYSTAL STRUCTURE OF O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS STRAIN KOD1
Descriptor:PROTEIN (O6-METHYLGUANINE-DNA METHYLTRANSFERASE), SULFATE ION
Authors:Hashimoto, H., Inoue, T., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:1999-01-12
Release date:2000-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hyperthermostable protein structure maintained by intra and inter-helix ion-pairs in archaeal O6-methylguanine-DNA methyltransferase.
J.Mol.Biol., 292, 1999
1WN7
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CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT
Descriptor:Family B DNA Polymerase, NICKEL (II) ION, GLYCEROL
Authors:Kuroita, T., Matsumura, H., Yokota, N., Hashimoto, H., Imanaka, T., Inoue, T., Kai, Y.
Deposit date:2004-07-28
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
2CW7
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
2CW8
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CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II
Descriptor:Endonuclease PI-PkoII, SULFATE ION, GLYCEROL
Authors:Matsumura, H., Takahashi, H., Inoue, T., Hashimoto, H., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
3N8T
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NATIVE STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS
Descriptor:alpha-amylase, GH57 family, DI(HYDROXYETHYL)ETHER, ...
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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CRYSTAL STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS, IN COMPLEX WITH GLUCOSE
Descriptor:alpha-amylase, GH57 family, BETA-D-GLUCOSE
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N98
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CRYSTAL STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS, IN COMPLEX WITH GLUCOSE AND ADDITIVES
Descriptor:alpha-amylase, GH57 family, BETA-D-GLUCOSE, ...
Authors:Santos, C.R., Tonoli, C.C.C., Trindade, D.M., Betzel, C., Takata, H., Kuriki, T., Kanai, T., Imanaka, T., Arni, R.K., Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
1WNS
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CRYSTAL STRUCTURE OF FAMILY B DNA POLYMERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS KOD1
Descriptor:DNA POLYMERASE
Authors:Hashimoto, H., Inoue, T., Kai, Y., Fujiwara, S., Takagi, M., Nishioka, M., Imanaka, T.
Deposit date:2004-08-09
Release date:2004-08-17
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of DNA Polymerase from Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
J.Mol.Biol., 306, 2001
2CVF
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CRYSTAL STRUCTURE OF THE RADB RECOMBINASE
Descriptor:DNA repair and recombination protein radB
Authors:Akiba, T., Ishii, N., Rashid, N., Morikawa, M., Imanaka, T., Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2CVH
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CRYSTAL STRUCTURE OF THE RADB RECOMBINASE
Descriptor:DNA repair and recombination protein radB
Authors:Akiba, T., Ishii, N., Rashid, N., Morikawa, M., Imanaka, T., Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2Z1C
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CRYSTAL STRUCTURE OF HYPC FROM THERMOCOCCUS KODAKARAENSIS KOD1
Descriptor:Hydrogenase expression/formation protein HypC, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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CRYSTAL STRUCTURE OF [NIFE] HYDROGENASE MATURATION PROTEIN, HYPD FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1E
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (OUTWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1F
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CRYSTAL STRUCTURE OF HYPE FROM THERMOCOCCUS KODAKARAENSIS (INWARD FORM)
Descriptor:Hydrogenase expression/formation protein HypE
Authors:Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A12
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CRYSTAL STRUCTURE OF TYPE III RUBISCO COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A13
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP AND ACTIVATED WITH CA
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, ...
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Sturcture-based optimization of a Type III Rubisco from a hyperthermophile
To be Published
3A43
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CRYSTAL STRUCTURE OF HYPA
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Aromi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3A44
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CRYSTAL STRUCTURE OF HYPA IN THE DIMERIC FORM
Descriptor:Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
3KDN
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, MAGNESIUM ION, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDO
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CRYSTAL STRUCTURE OF TYPE III RUBISCO SP6 MUTANT COMPLEXED WITH 2-CABP
Descriptor:Ribulose bisphosphate carboxylase, 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION
Authors:Nishitani, Y., Fujihashi, M., Doi, T., Yoshida, S., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3VM6
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CRYSTAL STRUCTURE OF RIBOSE-1,5-BISPHOSPHATE ISOMERASE FROM THERMOCOCCUS KODAKARENSIS KOD1 IN COMPLEX WITH ALPHA-D-RIBOSE-1,5-BISPHOSPHATE
Descriptor:Translation initiation factor eIF-2B, delta subunit, 1,5-di-O-phosphono-alpha-D-ribofuranose, ...
Authors:Nakamura, A., Fujihashi, M., Aono, R., Sato, T., Nishiba, Y., Yoshida, S., Yano, A., Atomi, H., Imanaka, T., Miki, K.
Deposit date:2011-12-08
Release date:2012-04-25
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3WDK
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE COMPLEXED WITH REACTION INTERMEDIATE
Descriptor:4-phosphopantoate--beta-alanine ligase, 5'-O-[(S)-hydroxy{[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]oxy}phosphoryl]adenosine, CITRATE ANION
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDL
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE COMPLEXED WITH ATP
Descriptor:4-phosphopantoate--beta-alanine ligase, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
3WDM
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CRYSTAL STRUCTURE OF 4-PHOSPHOPANTOATE-BETA-ALANINE LIGASE FROM THERMOCOCCUS KODAKARENSIS
Descriptor:4-phosphopantoate--beta-alanine ligase, ADENOSINE
Authors:Kishimoto, A., Kita, A., Ishibashi, T., Tomita, H., Yokooji, Y., Imanaka, T., Atomi, H., Miki, K.
Deposit date:2013-06-19
Release date:2014-04-02
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
Proteins, 82, 2014
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