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1OQU
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BU of 1oqu by Molmil
A protein coordinated tri-nuclear Fe complex formed during soaking of crystals of the ribonucleotide reductase R2F protein from Corynebacterium Ammoniagenes
Descriptor: ACETATE ION, FE (III) ION, OXYGEN MOLECULE, ...
Authors:Hogbom, M, Nordlund, P.
Deposit date:2003-03-11
Release date:2004-04-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A protein carboxylate coordinated oxo-centered tri-nuclear iron complex with possible implications for ferritin mineralization
Febs Lett., 567, 2004
1SYY
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BU of 1syy by Molmil
Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis
Descriptor: FE (III) ION, LEAD (II) ION, Ribonucleoside-diphosphate reductase beta chain
Authors:Hogbom, M, Stenmark, P, Voevodskaya, N, McClarty, G, Graslund, A, Nordlund, P.
Deposit date:2004-04-02
Release date:2004-07-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass.
Science, 305, 2004
1LP1
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BU of 1lp1 by Molmil
Protein Z in complex with an in vitro selected affibody
Descriptor: Affibody binding protein Z, Immunoglobulin G binding protein A, MAGNESIUM ION, ...
Authors:Hogbom, M, Eklund, M, Nygren, P.A, Nordlund, P.
Deposit date:2002-05-07
Release date:2003-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for recognition by an in vitro evolved affibody.
Proc.Natl.Acad.Sci.USA, 100, 2003
1KGN
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BU of 1kgn by Molmil
R2F from Corynebacterium Ammoniagenes in its oxidised, Fe containing, form
Descriptor: FE (III) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1JPR
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BU of 1jpr by Molmil
Mn substituted Ribonucleotide reductase R2 from E. coli oxidized by nitric oxide
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of Ribonucleotide reductase
Authors:Hogbom, M, Andersson, M.E, Nordlund, P.
Deposit date:2001-08-03
Release date:2001-08-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
1KGP
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BU of 1kgp by Molmil
R2F from Corynebacterium Ammoniagenes in its Mn substituted form
Descriptor: MANGANESE (II) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
1JQC
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BU of 1jqc by Molmil
Mn substituted Ribonucleotide reductase R2 from E. Coli oxidized by hydrogen peroxide and hydroxylamine
Descriptor: MANGANESE (II) ION, MERCURY (II) ION, Protein R2 of ribonucleotide reductase
Authors:Hogbom, M, Andersson, M.E, Nordlund, P.
Deposit date:2001-08-06
Release date:2001-08-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal structures of oxidized dinuclear manganese centres in Mn-substituted class I ribonucleotide reductase from Escherichia coli: carboxylate shifts with implications for O2 activation and radical generation.
J.Biol.Inorg.Chem., 6, 2001
1KGO
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BU of 1kgo by Molmil
R2F from Corynebacterium Ammoniagenes in its reduced, Fe containing, form
Descriptor: FE (II) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
2B43
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BU of 2b43 by Molmil
Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
Descriptor: non-structural polyprotein
Authors:Hogbom, M, Rohayem, J, Unge, T, Jones, T.A.
Deposit date:2005-09-22
Release date:2005-10-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
To be Published
2I4I
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BU of 2i4i by Molmil
Crystal Structure of human DEAD-box RNA helicase DDX3X
Descriptor: ADENOSINE MONOPHOSPHATE, ATP-dependent RNA helicase DDX3X
Authors:Hogbom, M, Karlberg, T, Arrowsmith, C, Berglund, H, Busam, R.D, Collins, R, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Johansson, I, Kotenyova, T, Magnusdottir, A, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Wallden, K, Weigelt, J, Welin, M, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
Deposit date:2006-08-22
Release date:2006-09-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Conserved Domains 1 and 2 of the Human DEAD-box Helicase DDX3X in Complex with the Mononucleotide AMP
J.Mol.Biol., 372, 2007
2ANI
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BU of 2ani by Molmil
Crystal structure of the F127Y mutant of Ribonucleotide Reductase R2 from Chlamydia trachomatis
Descriptor: FE (III) ION, LEAD (II) ION, Ribonucleoside-diphosphate reductase beta subunit
Authors:Hogbom, M, Stenmark, P, Nordlund, P.
Deposit date:2005-08-11
Release date:2006-07-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the high-valent FeIIIFeIV state in ribonucleotide reductase (RNR) of Chlamydia trachomatis--combined EPR, 57Fe-, 1H-ENDOR and X-ray studies.
Biochim.Biophys.Acta, 1774, 2007
1MXR
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BU of 1mxr by Molmil
High resolution structure of Ribonucleotide reductase R2 from E. coli in its oxidised (Met) form
Descriptor: FE (III) ION, GLYCEROL, MERCURY (II) ION, ...
Authors:Andersson, M.A, Hogbom, M, Nordlund, P.
Deposit date:2002-10-03
Release date:2003-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Displacement of the tyrosyl radical cofactor in ribonucleotide reductase obtained by single-crystal high-field EPR and 1.4-A x-ray data.
Proc.Natl.Acad.Sci.Usa, 100, 2003
3DHZ
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BU of 3dhz by Molmil
Apo (iron free) structure of C. ammoniagenes R2 protein
Descriptor: FE (II) ION, Ribonucleotide reductase subunit R2F
Authors:Hogbom, M, Nordlund, P.
Deposit date:2008-06-19
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural and mutational studies of the carboxylate cluster in Iron-free Ribonucleotide Reductase R2.
Biochemistry, 43, 2004
2G9N
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BU of 2g9n by Molmil
Structure of the DEAD domain of Human eukaryotic initiation factor 4A, eIF4A
Descriptor: Eukaryotic initiation factor 4A-I
Authors:Hogbom, M, Ogg, D, Arrowsmith, C, Berglund, H, Collins, R, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Structural Genomics Consortium (SGC)
Deposit date:2006-03-07
Release date:2006-03-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Comparative Structural Analysis of Human DEAD-Box RNA Helicases.
Plos One, 5, 2010
3R44
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BU of 3r44 by Molmil
Mycobacterium tuberculosis fatty acyl CoA synthetase
Descriptor: HISTIDINE, MALONATE ION, fatty acyl CoA synthetase FADD13 (FATTY-ACYL-CoA SYNTHETASE)
Authors:Andersson, C.S, Martinez Molina, D, Hogbom, M.
Deposit date:2011-03-17
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Mycobacterium tuberculosis Very-Long-Chain Fatty Acyl-CoA Synthetase: Structural Basis for Housing Lipid Substrates Longer than the Enzyme.
Structure, 20, 2012
5MLK
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BU of 5mlk by Molmil
Biotin dependent carboxylase AccA3 dimer from Mycobacterium tuberculosis (Rv3285)
Descriptor: Acetyl-COA carboxylase
Authors:Bennett, M.D, Hogbom, M.
Deposit date:2016-12-07
Release date:2017-03-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.939 Å)
Cite:Crystal structure of the essential biotin-dependent carboxylase AccA3 from Mycobacterium tuberculosis.
FEBS Open Bio, 7, 2017
4XB9
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BU of 4xb9 by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted diiron cofactor
Descriptor: FE (III) ION, PALMITIC ACID, Ribonuleotide reductase small subunit
Authors:Griese, J.J, Hogbom, M.
Deposit date:2014-12-16
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.798 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
4XBW
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BU of 4xbw by Molmil
R2-like ligand-binding oxidase with aerobically reconstituted dimanganese cofactor
Descriptor: MANGANESE (II) ION, PALMITIC ACID, Ribonucleotide reductase small subunit
Authors:Griese, J.J, Hogbom, M.
Deposit date:2014-12-17
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.991 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
4XBV
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BU of 4xbv by Molmil
R2-like ligand-binding oxidase with anaerobically reconstituted diiron cofactor
Descriptor: FE (II) ION, PALMITIC ACID, Ribonuleotide reductase small subunit
Authors:Griese, J.J, Hogbom, M.
Deposit date:2014-12-17
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.
J.Biol.Chem., 290, 2015
2A5V
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BU of 2a5v by Molmil
Crystal structure of M. tuberculosis beta carbonic anhydrase, Rv3588c, tetrameric form
Descriptor: CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE) (CARBONIC DEHYDRATASE), THIOCYANATE ION, ZINC ION
Authors:Covarrubias, A.S, Bergfors, T, Jones, T.A, Hogbom, M.
Deposit date:2005-07-01
Release date:2005-09-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Mechanics of the pH-dependent Activity of beta-Carbonic Anhydrase from Mycobacterium tuberculosis
J.Biol.Chem., 281, 2006
2Y3M
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BU of 2y3m by Molmil
Structure of the extra-membranous domain of the secretin HofQ from Actinobacillus actinomycetemcomitans
Descriptor: FORMIC ACID, GLYCEROL, PROTEIN TRANSPORT PROTEIN HOFQ
Authors:Tarry, M, Jaaskelainen, M, Tuominen, H, Ihalin, R, Hogbom, M.
Deposit date:2010-12-21
Release date:2011-04-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Extra-Membranous Domains of the Competence Protein Hofq Show DNA Binding, Flexibility and a Shared Fold with Type I Kh Domains.
J.Mol.Biol., 409, 2011
6NWR
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BU of 6nwr by Molmil
Thioester acyl-intermediate of Apolipoprotein N-acyltransferase (Lnt)
Descriptor: Apolipoprotein N-acyltransferase, DODECANE, DODECYL-BETA-D-MALTOSIDE
Authors:Wiseman, B, Hogbom, M.
Deposit date:2019-02-07
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Conformational changes in Apolipoprotein N-acyltransferase (Lnt).
Sci Rep, 10, 2020
6YD0
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BU of 6yd0 by Molmil
XFEL structure of the Soluble methane monooxygenase hydroxylase and regulatory subunit complex, from Methylosinus trichosporium OB3b, diferric state
Descriptor: FE (III) ION, GLYCEROL, Methane monooxygenase, ...
Authors:Srinivas, V, Hogbom, M.
Deposit date:2020-03-19
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.
J. Am. Chem. Soc., 142, 2020
7Z3E
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BU of 7z3e by Molmil
XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with hydroquinone NrdI from Bacillus cereus
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, MANGANESE (II) ION, Protein NrdI, ...
Authors:John, J, Lebrette, H, Aurelius, O, Hogbom, M.
Deposit date:2022-03-02
Release date:2022-09-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography.
Elife, 11, 2022
7Z3D
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BU of 7z3d by Molmil
XFEL structure of Class Ib ribonucleotide reductase dimanganese(II) NrdF in complex with oxidized NrdI from Bacillus cereus
Descriptor: FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Protein NrdI, ...
Authors:John, J, Lebrette, H, Aurelius, O, Hogbom, M.
Deposit date:2022-03-02
Release date:2022-09-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography.
Elife, 11, 2022

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