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2Z1Q
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BU of 2z1q by Molmil
Crystal structure of acyl CoA dehydrogenase
Descriptor: Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hikima, T, Kawano, Y, Nodake, Y, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-11
Release date:2008-05-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8
To be Published
4TWZ
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BU of 4twz by Molmil
Crystal Structure Analysis of E Coli. RecA Protein
Descriptor: MAGNESIUM ION, Protein RecA
Authors:Hikima, T, Hiraki, T, Furuse, M, Ikawa, S, Iwasaki, W, Shibata, T, Kamiya, N.
Deposit date:2014-07-02
Release date:2015-07-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Loop L1 governs the DNA-binding specificity and order for RecA-catalyzed reactions in homologous recombination and DNA repair
Nucleic Acids Res., 43, 2015
5XSO
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BU of 5xso by Molmil
Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221
Descriptor: FORMIC ACID, GLYCEROL, Response regulator FixJ
Authors:Nishizono, Y, Hisano, T, Sawai, H, Shiro, Y, Nakamura, H, Wright, G.S.A, Saeki, A, Hikima, T, Yamamoto, M, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2017-06-14
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
1EDR
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BU of 1edr by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM
Descriptor: 5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE
Authors:Chatake, T, Hikima, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2000-01-28
Release date:2000-02-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
5XT2
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BU of 5xt2 by Molmil
Crystal structures of full-length FixJ from B. japonicum crystallized in space group P212121
Descriptor: FORMIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Nishizono, Y, Hisano, T, Shiro, Y, Sawai, H, Wright, G.S.A, Saeki, A, Hikima, T, Nakamura, H, Yamamoto, M, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2017-06-16
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.652 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
1I3T
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BU of 1i3t by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T, Hikima, T, Chatake, T, Masaru, T, Sunami, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2001-02-16
Release date:2001-09-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex.
J.Biochem.(Tokyo), 130, 2001
1J8L
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BU of 1j8l by Molmil
Molecular and Crystal Structure of D(CGCAAATTMO4CGCG): the Watson-Crick Type N4-Methoxycytidine/Adenosine Base Pair in B-DNA
Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3'), MAGNESIUM ION
Authors:Hossain, M.T, Sunami, T, Tsunoda, M, Hikima, T, Chatake, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2001-05-22
Release date:2001-09-28
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs IV. N(4)-methoxycytosine shows a second face for Watson-Crick base-pairing, leading to purine transition mutagenesis.
Nucleic Acids Res., 29, 2001
1I47
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BU of 1i47 by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T, Hikima, T, Chatake, T, Tsunoda, M, Sunami, T, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:2001-02-20
Release date:2003-02-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex
J.Biochem.(Tokyo), 130, 2001
2EIH
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BU of 2eih by Molmil
Crystal Structure of NAD-dependent alcohol dehydrogenase
Descriptor: Alcohol dehydrogenase, ZINC ION
Authors:Kamiya, N, Hikima, T, Matsu, T, Maoka, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-13
Release date:2008-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure analysis of putative NAD-dependent alcohol dehydrogenase from Thermus thermophilus HB8
To be published
3WG7
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BU of 3wg7 by Molmil
A 1.9 angstrom radiation damage free X-ray structure of large (420KDa) protein by femtosecond crystallography
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Hirata, K, Shinzawa-Itoh, K, Yano, N, Takemura, S, Kato, K, Hatanaka, M, Muramoto, K, Kawahara, T, Tsukihara, T, Yamashita, E, Tono, K, Ueno, G, Hikima, T, Murakami, H, Inubushi, Y, Yabashi, M, Ishikawa, T, Yamamoto, M, Ogura, T, Sugimoto, H, Shen, J.R, Yoshikawa, S, Ago, H.
Deposit date:2013-07-29
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Nat.Methods, 11, 2014
2EHD
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BU of 2ehd by Molmil
Crystal Structure Analysis of Oxidoreductase
Descriptor: COBALT (II) ION, Oxidoreductase, short-chain dehydrogenase/reductase family
Authors:Kamiya, N, Hikima, T, Ebihara, A, Inoue, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-06
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure analysis of putative oxidoreductase from Thermus thermophilus HB8
to be published
2YR5
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BU of 2yr5 by Molmil
Crystal structure of L-phenylalanine oxidase from Psuedomonas sp.P501
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, Pro-enzyme of L-phenylalanine oxidase, ...
Authors:Ida, K, Kurabayashi, M, Suguro, M, Hikima, T, Yamamoto, M, Suzuki, H.
Deposit date:2007-04-02
Release date:2008-04-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501.
J.Biol.Chem., 283, 2008
7Y44
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BU of 7y44 by Molmil
Re-refinement of damage free X-ray structure of bovine cytochrome c oxidase at 1.9 angstrom resolution
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Tsukihara, T, Hirata, K, Ago, H.
Deposit date:2022-06-14
Release date:2022-07-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Nat.Methods, 11, 2014
6KSL
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BU of 6ksl by Molmil
Staphylococcus aureus lipase - S116A inactive mutant
Descriptor: CALCIUM ION, LAURIC ACID, Lipase 2, ...
Authors:Kitadokoro, K, Tanaka, M, Kamitani, S.
Deposit date:2019-08-24
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of pathogenic Staphylococcus aureus lipase complex with the anti-obesity drug orlistat.
Sci Rep, 10, 2020
8YIB
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BU of 8yib by Molmil
Staphylococcus aureus lipase -PSA complex - covalent bonding state
Descriptor: ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Kitadokoro, J, Kamitani, S, Kitadokoro, K.
Deposit date:2024-02-29
Release date:2024-06-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid.
Febs Open Bio, 14, 2024
7BXX
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BU of 7bxx by Molmil
Tetanus neurotoxin translocation domain -C467S
Descriptor: Tetanus toxin
Authors:Zhang, C.M, Imoto, Y, Fukuda, Y, Yamashita, E, Inoue, T.
Deposit date:2020-04-21
Release date:2021-02-17
Last modified:2023-11-29
Method:SOLUTION SCATTERING (2.34 Å), X-RAY DIFFRACTION
Cite:Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses.
J Struct Biol X, 5, 2021
7BY4
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BU of 7by4 by Molmil
Tetanus neurotoxin receptor binding domain
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, SODIUM ION, ...
Authors:Zhang, C.M, Imoto, Y, Inoue, T.
Deposit date:2020-04-21
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses.
J Struct Biol X, 5, 2021
7BY5
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BU of 7by5 by Molmil
Tetanus neurotoxin mutant-(H233A/E234Q/H237A/Y375F)
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Zhang, C.M, Imoto, Y, Fukuda, Y, Yamashita, E, Inoue, T.
Deposit date:2020-04-21
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural flexibility of the tetanus neurotoxin revealed by crystallographic and solution scattering analyses.
J Struct Biol X, 5, 2021
8K7Q
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BU of 8k7q by Molmil
Staphylococcus aureus lipase S116A inactive mutant-PSA complex
Descriptor: ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Kitadokoro, J, Kamitani, S, Kitadokoro, K.
Deposit date:2023-07-27
Release date:2024-06-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid.
Febs Open Bio, 14, 2024
8K7P
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BU of 8k7p by Molmil
Staphylococcus aureus lipase -PSA complex
Descriptor: ACETIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Kitadokoro, J, Kamitani, S, Kitadokoro, K.
Deposit date:2023-07-27
Release date:2024-06-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structure of Staphylococcus aureus lipase complex with unsaturated petroselinic acid.
Febs Open Bio, 14, 2024
457D
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BU of 457d by Molmil
MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA
Descriptor: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A.
Deposit date:1999-03-06
Release date:2000-01-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
6KSM
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BU of 6ksm by Molmil
Staphylococcus aureus lipase -Orlistat complex
Descriptor: (2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID, CALCIUM ION, LAURIC ACID, ...
Authors:Kitadokoro, K, Tanaka, M, Kamitani, S.
Deposit date:2019-08-24
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structure of pathogenic Staphylococcus aureus lipase complex with the anti-obesity drug orlistat.
Sci Rep, 10, 2020
6KSI
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BU of 6ksi by Molmil
Staphylococcus aureus lipase - native
Descriptor: CALCIUM ION, HEXANOIC ACID, LAURIC ACID, ...
Authors:Kitadokoro, K, Tanaka, M, Kamitani, S.
Deposit date:2019-08-24
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of pathogenic Staphylococcus aureus lipase complex with the anti-obesity drug orlistat.
Sci Rep, 10, 2020
3WGE
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BU of 3wge by Molmil
Crystal structure of ERp46 Trx2
Descriptor: GLYCEROL, Thioredoxin domain-containing protein 5
Authors:Inaba, K, Suzuki, M, Kojima, R.
Deposit date:2013-08-04
Release date:2014-06-25
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014
3WGD
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BU of 3wgd by Molmil
Crystal structure of ERp46 Trx1
Descriptor: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Inaba, K, Suzuki, M, Kojima, R.
Deposit date:2013-08-04
Release date:2014-06-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014

 

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