Author results

2Z1Q
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CRYSTAL STRUCTURE OF ACYL COA DEHYDROGENASE
Descriptor:Acyl-CoA dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hikima, T., Kawano, Y., Nodake, Y., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-11
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8
To be Published
4TWZ
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CRYSTAL STRUCTURE ANALYSIS OF E COLI. RECA PROTEIN
Descriptor:Protein RecA, MAGNESIUM ION
Authors:Hikima, T., Hiraki, T., Furuse, M., Ikawa, S., Iwasaki, W., Shibata, T., Kamiya, N.
Deposit date:2014-07-02
Release date:2015-07-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Loop L1 governs the DNA-binding specificity and order for RecA-catalyzed reactions in homologous recombination and DNA repair
Nucleic Acids Res., 43, 2015
3WG7
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A 1.9 ANGSTROM RADIATION DAMAGE FREE X-RAY STRUCTURE OF LARGE (420KDA) PROTEIN BY FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J.R., Yoshikawa, S., Ago, H.
Deposit date:2013-07-29
Release date:2014-04-30
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Nat.Methods, 2014
1I3T
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T., Hikima, T., Chatake, T., Masaru, T., Sunami, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-02-16
Release date:2001-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex.
J.Biochem.(Tokyo), 130, 2001
1I47
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T., Hikima, T., Chatake, T., Tsunoda, M., Sunami, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-02-20
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex
J.Biochem.(Tokyo), 130, 2001
1J8L
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCAAATTMO4CGCG): THE WATSON-CRICK TYPE N4-METHOXYCYTIDINE/ADENOSINE BASE PAIR IN B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3'), MAGNESIUM ION
Authors:Hossain, M.T., Sunami, T., Tsunoda, M., Hikima, T., Chatake, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-05-22
Release date:2001-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs IV. N(4)-methoxycytosine shows a second face for Watson-Crick base-pairing, leading to purine transition mutagenesis.
Nucleic Acids Res., 29, 2001
1EDR
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM
Descriptor:5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE
Authors:Chatake, T., Hikima, T., Ono, A., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2000-01-28
Release date:2000-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
2EIH
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CRYSTAL STRUCTURE OF NAD-DEPENDENT ALCOHOL DEHYDROGENASE
Descriptor:Alcohol dehydrogenase, ZINC ION
Authors:Kamiya, N., Hikima, T., Matsu, T., Maoka, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-13
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure analysis of putative NAD-dependent alcohol dehydrogenase from Thermus thermophilus HB8
To be published
5XSO
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CRYSTAL STRUCTURE OF FULL-LENGTH FIXJ FROM B. JAPONICUM CRYSTALLIZED IN SPACE GROUP C2221
Descriptor:Response regulator FixJ, GLYCEROL, FORMIC ACID
Authors:Nishizono, Y., Hisano, T., Sawai, H., Shiro, Y., Nakamura, H., Wright, G.S.A., Saeki, A., Hikima, T., Yamamoto, M., Antonyuk, S.V., Hasnain, S.S.
Deposit date:2017-06-14
Release date:2018-05-23
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
5XT2
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CRYSTAL STRUCTURES OF FULL-LENGTH FIXJ FROM B. JAPONICUM CRYSTALLIZED IN SPACE GROUP P212121
Descriptor:Response regulator FixJ, MAGNESIUM ION, GLYCEROL, ...
Authors:Nishizono, Y., Hisano, T., Shiro, Y., Sawai, H., Wright, G.S.A., Saeki, A., Hikima, T., Nakamura, H., Yamamoto, M., Antonyuk, S.V., Hasnain, S.S.
Deposit date:2017-06-16
Release date:2018-05-23
Method:X-RAY DIFFRACTION (2.652 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
2EHD
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CRYSTAL STRUCTURE ANALYSIS OF OXIDOREDUCTASE
Descriptor:Oxidoreductase, short-chain dehydrogenase/reductase family, COBALT (II) ION
Authors:Kamiya, N., Hikima, T., Ebihara, A., Inoue, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-06
Release date:2008-03-11
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure analysis of putative oxidoreductase from Thermus thermophilus HB8
to be published
2YR5
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CRYSTAL STRUCTURE OF L-PHENYLALANINE OXIDASE FROM PSUEDOMONAS SP.P501
Descriptor:Pro-enzyme of L-phenylalanine oxidase, SULFATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ida, K., Kurabayashi, M., Suguro, M., Hikima, T., Yamamoto, M., Suzuki, H.
Deposit date:2007-04-02
Release date:2008-04-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501.
J.Biol.Chem., 283, 2008
3AD7
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HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH METHYLTHIO ACETATE
Descriptor:Subunit alpha of sarcosine oxidase, Subunit beta of sarcosine oxidase, Subunit gamma of sarcosine oxidase, ...
Authors:Suzuki, H., Moriguchi, T., Ida, K.
Deposit date:2010-01-15
Release date:2010-08-25
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96.
J.Biochem., 148, 2010
3AD8
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HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH PYRROLE 2-CARBOXYLATE
Descriptor:SARCOSINE OXIDASE ALPHA SUBUNIT, SARCOSINE OXIDASE BETA SUBUNIT, SARCOSINE OXIDASE GAMMA SUBUNIT, ...
Authors:Suzuki, H., Moriguchi, T., Ida, K.
Deposit date:2010-01-15
Release date:2010-08-25
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96.
J.Biochem., 148, 2010
3AD9
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HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 SARCOSINE-REDUCED FORM
Descriptor:SARCOSINE OXIDASE ALPHA SUBUNIT, SARCOSINE OXIDASE BETA SUBUNIT, SARCOSINE OXIDASE GAMMA SUBUNIT, ...
Authors:Suzuki, H., Moriguchi, T., Ida, K.
Deposit date:2010-01-15
Release date:2010-08-25
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96.
J.Biochem., 148, 2010
3ADA
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HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH SULFITE
Descriptor:SARCOSINE OXIDASE ALPHA SUBUNIT, SARCOSINE OXIDASE BETA SUBUNIT, SARCOSINE OXIDASE GAMMA SUBUNIT, ...
Authors:Suzuki, H., Moriguchi, T., Ida, K.
Deposit date:2010-01-15
Release date:2010-08-25
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96.
J.Biochem., 148, 2010
457D
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T., Ono, A., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:1999-03-06
Release date:2000-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
2YR4
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CRYSTAL STRUCTURE OF L-PHENYLALANINE OXIASE FROM PSUEDOMONAS SP. P-501
Descriptor:Pro-enzyme of L-phenylalanine oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Ida, K., Kurabayashi, M., Suguro, M., Suzuki, H.
Deposit date:2007-04-02
Release date:2008-04-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501.
J.Biol.Chem., 283, 2008
2YR6
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CRYSTAL STRUCTURE OF L-PHENYLALANINE OXIDASE FROM PSUEDOMONAS SP.P501
Descriptor:Pro-enzyme of L-phenylalanine oxidase, SULFATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ida, K., Kurabayashi, M., Suguro, M., Suzuki, H.
Deposit date:2007-04-02
Release date:2008-04-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501.
J.Biol.Chem., 283, 2008
3WGD
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CRYSTAL STRUCTURE OF ERP46 TRX1
Descriptor:Thioredoxin domain-containing protein 5, PHOSPHATE ION, GLYCEROL, ...
Authors:Inaba, K., Suzuki, M., Kojima, R.
Deposit date:2013-08-04
Release date:2014-06-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014
3WGE
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CRYSTAL STRUCTURE OF ERP46 TRX2
Descriptor:Thioredoxin domain-containing protein 5, GLYCEROL
Authors:Inaba, K., Suzuki, M., Kojima, R.
Deposit date:2013-08-04
Release date:2014-06-25
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014
3WGX
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CRYSTAL STRUCTURE OF ERP46 TRX2 IN A COMPLEX WITH PRX4 C-TERM
Descriptor:Thioredoxin domain-containing protein 5, Peroxiredoxin-4, GLYCEROL
Authors:Inaba, K., Suzuki, M., Kojima, R.
Deposit date:2013-08-13
Release date:2014-06-25
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family
Structure, 22, 2014