Author results

1GZA
  • Download 1gza
  • View 1gza
Molmil generated image of 1gza
PEROXIDASE
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Itakura, H.
Deposit date:1996-11-13
Release date:1997-03-12
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Binding of iodide to Arthromyces ramosus peroxidase investigated with X-ray crystallographic analysis, 1H and 127I NMR spectroscopy, and steady-state kinetics.
J.Biol.Chem., 272, 1997
4FXC
  • Download 4fxc
  • View 4fxc
Molmil generated image of 4fxc
TERTIARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM SPIRULINA PLATENSIS REFINED AT 2.5 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS OF PLANT-TYPE FERREDOXINS AND AN ELECTROSTATIC POTENTIAL ANALYSIS
Descriptor:FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER
Authors:Fukuyama, K., Tsukihara, T.
Deposit date:1995-04-25
Release date:1995-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Tertiary structure of [2Fe-2S] ferredoxin from Spirulina platensis refined at 2.5 A resolution: structural comparisons of plant-type ferredoxins and an electrostatic potential analysis.
J.Biochem.(Tokyo), 117, 1995
2FCR
  • Download 2fcr
  • View 2fcr
Molmil generated image of 2fcr
CRYSTAL STRUCTURE OF OXIDIZED FLAVODOXIN FROM A RED ALGA CHONDRUS CRISPUS REFINED AT 1.8 ANGSTROMS RESOLUTION: DESCRIPTION OF THE FLAVIN MONONUCLEOTIDE BINDING SITE
Descriptor:FLAVODOXIN, FLAVIN MONONUCLEOTIDE
Authors:Fukuyama, K.
Deposit date:1992-02-03
Release date:1992-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of oxidized flavodoxin from a red alga Chondrus crispus refined at 1.8 A resolution. Description of the flavin mononucleotide binding site
J.Mol.Biol., 225, 1992
1ARU
  • Download 1aru
  • View 1aru
Molmil generated image of 1aru
CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CYANIDE ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1ARV
  • Download 1arv
  • View 1arv
Molmil generated image of 1arv
CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CYANIDE ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1ARW
  • Download 1arw
  • View 1arw
Molmil generated image of 1arw
CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CYANIDE ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1ARX
  • Download 1arx
  • View 1arx
Molmil generated image of 1arx
CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1ARY
  • Download 1ary
  • View 1ary
Molmil generated image of 1ary
CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1995-04-25
Release date:1996-01-29
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of cyanide- and triiodide-bound forms of Arthromyces ramosus peroxidase at different pH values. Perturbations of active site residues and their implication in enzyme catalysis.
J.Biol.Chem., 270, 1995
1IQZ
  • Download 1iqz
  • View 1iqz
Molmil generated image of 1iqz
OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
  • Download 1ir0
  • View 1ir0
Molmil generated image of 1ir0
OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
2E39
  • Download 2e39
  • View 2e39
Molmil generated image of 2e39
CRYSTAL STRUCTURE OF THE CN-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2E3A
  • Download 2e3a
  • View 2e3a
Molmil generated image of 2e3a
CRYSTAL STRUCTURE OF THE NO-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2E3B
  • Download 2e3b
  • View 2e3b
Molmil generated image of 2e3b
CRYSTAL STRUCTURE OF THE HA-BOUND FORM OF ARTHROMYCES RAMOSUS PEROXIDASE AT 1.3 ANGSTROMS RESOLUTION
Descriptor:Peroxidase, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Fukuyama, K., Okada, T.
Deposit date:2006-11-22
Release date:2007-03-20
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structures of cyanide, nitric oxide and hydroxylamine complexes of Arthromyces ramosusperoxidase at 100 K refined to 1.3 A resolution: coordination geometries of the ligands to the haem iron
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
1CK6
  • Download 1ck6
  • View 1ck6
Molmil generated image of 1ck6
BINDING MODE OF SALICYLHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
Descriptor:PROTEIN (PEROXIDASE), N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Fukuyama, K., Itakura, H.
Deposit date:1999-04-28
Release date:1999-12-29
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Binding of salicylhydroxamic acid and several aromatic donor molecules to Arthromyces ramosus peroxidase, investigated by X-ray crystallography, optical difference spectroscopy, NMR relaxation, molecular dynamics, and kinetics.
Biochemistry, 38, 1999
1HSR
  • Download 1hsr
  • View 1hsr
Molmil generated image of 1hsr
BINDING MODE OF BENZHYDROXAMIC ACID TO ARTHROMYCES RAMOSUS PEROXIDASE
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Itakura, H.
Deposit date:1997-07-01
Release date:1998-07-01
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Binding mode of benzhydroxamic acid to Arthromyces ramosus peroxidase shown by X-ray crystallographic analysis of the complex at 1.6 A resolution.
FEBS Lett., 412, 1997
1GZB
  • Download 1gzb
  • View 1gzb
Molmil generated image of 1gzb
PEROXIDASE
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Fukuyama, K., Kunishima, N., Amada, F.
Deposit date:1996-11-13
Release date:1997-03-12
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pentacoordination of the heme iron of Arthromyces ramosus peroxidase shown by a 1.8 A resolution crystallographic study at pH 4.5.
FEBS Lett., 378, 1996
1C8I
  • Download 1c8i
  • View 1c8i
Molmil generated image of 1c8i
BINDING MODE OF HYDROXYLAMINE TO ARTHROMYCES RAMOSUS PEROXIDASE
Descriptor:PROTEIN (PEROXIDASE), N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ...
Authors:Wariishi, H., Nonaka, D., Johjima, T., Nakamura, N., Naruta, Y., Kubo, K., Fukuyama, K.
Deposit date:2000-05-08
Release date:2001-01-17
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct binding of hydroxylamine to the heme iron of Arthromyces ramosus peroxidase. Substrate analogue that inhibits compound I formation in a competetive manner.
J.Biol.Chem., 275, 2000
1C8N
  • Download 1c8n
  • View 1c8n
Molmil generated image of 1c8n
TOBACCO NECROSIS VIRUS
Descriptor:COAT PROTEIN, CALCIUM ION
Authors:Oda, Y., Fukuyama, K.
Deposit date:2000-05-20
Release date:2000-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of tobacco necrosis virus at 2.25 A resolution.
J.Mol.Biol., 300, 2000
1IRM
  • Download 1irm
  • View 1irm
Molmil generated image of 1irm
CRYSTAL STRUCTURE OF APO HEME OXYGENASE-1
Descriptor:apo heme oxygenase-1
Authors:Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M., Fukuyama, K.
Deposit date:2001-10-09
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of rat apo-heme oxygenase-1 (HO-1): mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms
Biochemistry, 41, 2002
2E0W
  • Download 2e0w
  • View 2e0w
Molmil generated image of 2e0w
T391A PRECURSOR MUTANT PROTEIN OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0X
  • Download 2e0x
  • View 2e0x
Molmil generated image of 2e0x
CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI (MONOCLINIC FORM)
Descriptor:Gamma-glutamyltranspeptidase, CALCIUM ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0Y
  • Download 2e0y
  • View 2e0y
Molmil generated image of 2e0y
CRYSTAL STRUCTURE OF THE SAMARIUM DERIVATIVE OF MATURE GAMMA-GLUTAMYLTRANSPEPTIDASE FROM ESCHERICHIA COLI
Descriptor:Gamma-glutamyltranspeptidase, GLYCEROL, SAMARIUM (III) ION
Authors:Okada, T., Wada, K., Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
1IYZ
  • Download 1iyz
  • View 1iyz
Molmil generated image of 1iyz
CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1IZ0
  • Download 1iz0
  • View 1iz0
Molmil generated image of 1iz0
CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, SULFATE ION
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1ARP
  • Download 1arp
  • View 1arp
Molmil generated image of 1arp
CRYSTAL STRUCTURE OF THE FUNGAL PEROXIDASE FROM ARTHROMYCES RAMOSUS AT 1.9 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS WITH THE LIGNIN AND CYTOCHROME C PEROXIDASES
Descriptor:PEROXIDASE, N-ACETYL-D-GLUCOSAMINE, CALCIUM ION, ...
Authors:Kunishima, N., Fukuyama, K.
Deposit date:1993-06-18
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the fungal peroxidase from Arthromyces ramosus at 1.9 A resolution. Structural comparisons with the lignin and cytochrome c peroxidases.
J.Mol.Biol., 235, 1994