Author results

2Z8X
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CRYSTAL STRUCTURE OF EXTRACELLULAR LIPASE FROM PSEUDOMONAS SP. MIS38
Descriptor:Lipase, CALCIUM ION, ZINC ION
Authors:Angkawidjaja, C., You, D.J., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2007-09-11
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007
2Z8Z
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CRYSTAL STRUCTURE OF A PLATINUM-BOUND S445C MUTANT OF PSEUDOMONAS SP. MIS38 LIPASE
Descriptor:Lipase, CALCIUM ION, ZINC ION, ...
Authors:Angkawidjaja, C., You, D.J., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2007-09-13
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation
FEBS Lett., 581, 2007
2ZVD
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CRYSTAL STRUCTURE OF PSEUDOMONAS SP. MIS38 LIPASE IN AN OPEN CONFORMATION
Descriptor:Lipase, CALCIUM ION
Authors:Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2008-11-05
Release date:2009-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3A6Z
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CRYSTAL STRUCTURE OF PSEUDOMONAS SP. MIS38 LIPASE (PML) IN THE OPEN CONFORMATION FOLLOWING DIALYSIS AGAINST CA-FREE BUFFER
Descriptor:Lipase, CALCIUM ION
Authors:Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2009-09-10
Release date:2010-05-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3A70
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CRYSTAL STRUCTURE OF PSEUDOMONAS SP. MIS38 LIPASE IN COMPLEX WITH DIETHYL PHOSPHATE
Descriptor:Lipase, CALCIUM ION, DIETHYL PHOSPHONATE, ...
Authors:Angkawidjaja, C., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2009-09-10
Release date:2010-05-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3AIK
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CRYSTAL STRUCTURE OF A HSL-LIKE CARBOXYLESTERASE FROM SULFOLOBUS TOKODAII
Descriptor:303aa long hypothetical esterase, (4S)-2-METHYL-2,4-PENTANEDIOL, (4R)-2-METHYLPENTANE-2,4-DIOL, ...
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIL
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CRYSTAL STRUCTURE OF A HSL-LIKE CARBOXYLESTERASE FROM SULFOLOBUS TOKODAII COMPLEXED WITH PARAOXON
Descriptor:303aa long hypothetical esterase, DIETHYL PHOSPHONATE, (4R)-2-METHYLPENTANE-2,4-DIOL, ...
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIM
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R267E MUTANT OF A HSL-LIKE CARBOXYLESTERASE FROM SULFOLOBUS TOKODAII
Descriptor:303aa long hypothetical esterase, (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, ...
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIN
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R267G MUTANT OF A HSL-LIKE CARBOXYLESTERASE FROM SULFOLOBUS TOKODAII
Descriptor:303aa long hypothetical esterase, (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, ...
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
3AIO
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R267K MUTANT OF A HSL-LIKE CARBOXYLESTERASE FROM SULFOLOBUS TOKODAII
Descriptor:303aa long hypothetical esterase, (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, ...
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-05-16
Release date:2011-06-08
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii
Febs J., 279, 2012
5ZMJ
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CRYSTAL STRUCTURE OF THE FAB REGION OF A NEUTRALIZING FULLY HUMAN ANTIBODY AGAINST GM-CSF
Descriptor:Heavy chain of a Fab fraction of human IgG, Light chain of a Fab fraction of human IgG, SULFATE ION, ...
Authors:Angkawidjaja, C., Torashima, T.
Deposit date:2018-04-04
Release date:2019-04-17
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystal structure of the Fab region of a neutralizing fully human antibody against GM-CSF
To Be Published
2ZJ6
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CRYSTAL STRUCTURE OF D337A MUTANT OF PSEUDOMONAS SP. MIS38 LIPASE
Descriptor:Lipase, CALCIUM ION, ZINC ION
Authors:Angkawidjaja, C., Kuwahara, K., Kanaya, S.
Deposit date:2008-02-29
Release date:2008-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability
Protein Eng.Des.Sel., 21, 2008
2ZJ7
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CRYSTAL STRUCTURE OF D157A MUTANT OF PSEUDOMONAS SP. MIS38 LIPASE
Descriptor:Lipase, CALCIUM ION, ZINC ION
Authors:Angkawidjaja, C., Kuwahara, K., Kanaya, S.
Deposit date:2008-02-29
Release date:2008-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability
Protein Eng.Des.Sel., 21, 2008
2ZQB
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CRYSTAL STRUCTURE OF A PSYCHROTROPHIC RNASEHI VARIANT WITH SEXTUPLE THERMOSTABILIZING MUTATIONS
Descriptor:Ribonuclease HI, SULFATE ION
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2008-08-07
Release date:2009-06-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Destabilization of psychrotrophic RNase HI in a localized fashion as revealed by mutational and X-ray crystallographic analyses
Febs J., 276, 2009
3ALY
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CRYSTAL STRUCTURE OF RNASE HI FROM SULFOLOBUS TOKODAII WITH C-TERMINAL DELETION
Descriptor:Putative uncharacterized protein ST0753
Authors:Angkawidjaja, C., Takano, K., Kanaya, S.
Deposit date:2010-08-10
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Stabilization by fusion to the C-terminus of hyperthermophile Sulfolobus tokodaii RNase HI: a possibility of protein stabilization tag
Plos One, 6, 2011
3ASM
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CRYSTAL STRUCTURE OF Q54A MUTANT PROTEIN OF BST-RNASE HIII
Descriptor:Ribonuclease HIII
Authors:Angkawidjaja, C., Kanaya, S.
Deposit date:2010-12-16
Release date:2011-06-08
Last modified:2011-11-23
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Identification of the substrate binding site in the N-terminal TBP-like domain of RNase H3.
Febs Lett., 585, 2011
3AUK
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CRYSTAL STRUCTURE OF A LIPASE FROM GEOBACILLUS SP. SBS-4S
Descriptor:Lipase, ZINC ION, CALCIUM ION, ...
Authors:Angkawidjaja, C., Tayyab, M., Rashid, N., Kanaya, S.
Deposit date:2011-02-08
Release date:2012-02-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of a lipase from Geobacillus sp. SBS-4S
TO BE PUBLISHED
3B09
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CRYSTAL STRUCTURE OF THE N-DOMAIN OF FKBP22 FROM SHEWANELLA SP. SIB1
Descriptor:Peptidyl-prolyl cis-trans isomerase
Authors:Budiman, C., Angkawidjaja, C., Motoike, H., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-06-07
Release date:2012-04-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of N-domain of FKBP22 from Shewanella sp. SIB1: dimer dissociation by disruption of Val-Leu knot
Protein Sci., 20, 2011
3AFG
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CRYSTAL STRUCTURE OF PRON-TK-SP FROM THERMOCOCCUS KODAKARAENSIS
Descriptor:Subtilisin-like serine protease, CALCIUM ION
Authors:Foophow, T., Tanaka, S., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-03-01
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a subtilisin homologue, Tk-SP, from Thermococcus kodakaraensis: requirement of a C-terminal beta-jelly roll domain for hyperstability.
J.Mol.Biol., 400, 2010
3AHP
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CRYSTAL STRUCTURE OF STABLE PROTEIN, CUTA1, FROM A PSYCHROTROPHIC BACTERIUM SHEWANELLA SP. SIB1
Descriptor:CutA1
Authors:Tanaka, S., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-04-26
Release date:2011-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1
J.SYNCHROTRON RADIAT., 18, 2011
3AOV
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH PLP
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-10-07
Release date:2011-10-12
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3AOW
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH AKG
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2010-10-07
Release date:2011-10-12
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3ATH
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH FOUR AKGS AS SUBSTRATES AND ALLOSTERIC EFFECTORS
Descriptor:Putative uncharacterized protein PH0207, PYRIDOXAL-5'-PHOSPHATE, 2-OXOGLUTARIC ACID
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-01-05
Release date:2012-01-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine
To be Published
3AV7
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CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII KYNURENINE AMINOTRANSFERASE IN COMPLEX WITH PMP, KYN AS SUBSTRATES AND KYA AS PRODUCTS
Descriptor:Putative uncharacterized protein PH0207, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid, ...
Authors:Okada, K., Angkawidjaja, C., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-02-23
Release date:2012-03-07
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural insight into kynurenic acid excretion mechanisms of kynurenine aminotransferase in the hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
3U3G
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STRUCTURE OF LC11-RNASE H1 ISOLATED FROM COMPOST BY METAGENOMIC APPROACH: INSIGHT INTO THE STRUCTURAL BASES FOR UNUSUAL ENZYMATIC PROPERTIES OF STO-RNASE H1
Descriptor:Ribonuclease H, CHLORIDE ION, UNKNOWN LIGAND
Authors:Nguyen, T.N., Angkawidjaja, C., Kanaya, E., Koga, Y., Takano, K., Kanaya, S.
Deposit date:2011-10-05
Release date:2012-03-07
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1
Protein Sci., 21, 2012
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