Author results

3VJJ
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CRYSTAL STRUCTURE ANALYSIS OF THE P9-1
Descriptor:P9-1
Authors:Akita, F., Higashiura, A., Suzuki, M., Tsukihara, T., Nakagawa, A., Omura, T.
Deposit date:2011-10-24
Release date:2011-12-21
Last modified:2013-07-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic analysis reveals octamerization of viroplasm matrix protein P9-1 of Rice black streaked dwarf virus
J.Virol., 86, 2012
2E0Z
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CRYSTAL STRUCTURE OF VIRUS-LIKE PARTICLE FROM PYROCOCCUS FURIOSUS
Descriptor:Virus-like particle
Authors:Akita, F., Chong, K.T., Tanaka, H., Yamashita, E., Miyazaki, N., Nakaishi, Y., Namba, K., Ono, Y., Suzuki, M., Tsukihara, T., Nakagawa, A.
Deposit date:2006-10-16
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Crystal Structure of a Virus-like Particle from the Hyperthermophilic Archaeon Pyrococcus furiosus Provides Insight into the Evolution of Viruses
J.Mol.Biol., 368, 2007
6K33
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STRUCTURE OF PSI-ISIA SUPERCOMPLEX FROM THERMOSYNECHOCOCCUS VULCANUS
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Akita, F., Nagao, R., Kato, K., Shen, J.R., Miyazaki, N.
Deposit date:2019-05-16
Release date:2020-05-20
Last modified:2020-05-27
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins.
Commun Biol, 3, 2020
3WHO
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X-RAY-CRYSTALLOGRAPHIC STRUCTURE OF AN RNASE PO1 EXHIBITING ANTI-TUMOR ACTIVITY
Descriptor:Guanyl-specific ribonuclease Po1
Authors:Kobayashi, H., Katsurtani, T., Hara, Y., Motoyoshi, N., Itagaki, T., Akita, F., Higashiura, A., Yamada, Y., Suzuki, M., Inokuchi, N.
Deposit date:2013-08-30
Release date:2014-07-02
Last modified:2019-10-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray crystallographic structure of RNase Po1 that exhibits anti-tumor activity.
Biol.Pharm.Bull., 37, 2014
4UB6
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NATIVE STRUCTURE OF PHOTOSYSTEM II (DATASET-1) BY A FEMTOSECOND X-RAY LASER
Descriptor:Photosystem Q(B) protein, Photosystem II CP47 chlorophyll apoprotein, Photosystem II 44 kDa reaction center protein, ...
Authors:Suga, M., Akita, F., Hirata, K., Ueno, G., Murakami, H., Nakajima, Y., Shimizu, T., Yamashita, K., Yamamoto, M., Ago, H., Shen, J.R.
Deposit date:2014-08-12
Release date:2014-12-03
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses.
Nature, 517, 2015
4UB8
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NATIVE STRUCTURE OF PHOTOSYSTEM II (DATASET-2) BY A FEMTOSECOND X-RAY LASER
Descriptor:Photosystem Q(B) protein, Photosystem II CP47 chlorophyll apoprotein, Photosystem II 44 kDa reaction center protein, ...
Authors:Suga, M., Akita, F., Hirata, K., Ueno, G., Murakami, H., Nakajima, Y., Shimizu, T., Yamashita, K., Yamamoto, M., Ago, H., Shen, J.R.
Deposit date:2014-08-12
Release date:2014-12-03
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses.
Nature, 517, 2015
5ZZN
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CRYSTAL STRUCTURE OF PHOTOSYSTEM II FROM AN SQDG-DEFICIENT MUTANT OF THERMOSYNECHOCOCCUS ELONGATUS
Descriptor:Photosystem II protein D1 1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Nakajima, Y., Umena, Y., Nagao, R., Endo, K., Kobayashi, K., Akita, F., Suga, M., Wada, H., Noguchi, T., Shen, J.R.
Deposit date:2018-06-03
Release date:2018-08-01
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus.
J. Biol. Chem., 293, 2018
6J3Y
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STRUCTURE OF C2S2-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J3Z
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STRUCTURE OF C2S1M1-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J40
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STRUCTURE OF C2S2M2-TYPE PSII-FCPII SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem II reaction center protein D1, Photosystem II chlorophyll protein CP47, Photosystem II chlorophyll protein CP43, ...
Authors:Nagao, R., Kato, K., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6JEO
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STRUCTURE OF PSI TETRAMER FROM ANABAENA
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2 1, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-02-06
Release date:2019-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy.
Nat Commun, 10, 2019
6KMW
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STRUCTURE OF PSI FROM H. HONGDECHLORIS GROWN UNDER WHITE LIGHT CONDITION
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-08-01
Release date:2020-01-15
Last modified:2020-01-29
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Structural basis for the adaptation and function of chlorophyll f in photosystem I.
Nat Commun, 11, 2020
6KMX
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STRUCTURE OF PSI FROM H. HONGDECHLORIS GROWN UNDER FAR-RED LIGHT CONDITION
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.
Deposit date:2019-08-01
Release date:2020-01-15
Last modified:2020-01-29
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Structural basis for the adaptation and function of chlorophyll f in photosystem I.
Nat Commun, 11, 2020
6L4T
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STRUCTURE OF THE PERIPHERAL FCPI FROM DIATOM
Descriptor:Fucoxanthin chlorophyll a/c-binding protein Lhcr12, Fucoxanthin chlorophyll a/c-binding protein Lhcr10, Fucoxanthin chlorophyll a/c-binding protein Lhcr4, ...
Authors:Nagao, R., Kato, K., Miyazaki, N., Akita, F., Shen, J.R.
Deposit date:2019-10-21
Release date:2020-05-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom
Nat Commun, 2020
6L4U
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STRUCTURE OF THE PSI-FCPI SUPERCOMPLEX FROM DIATOM
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Nagao, R., Kato, K., Miyazaki, N., Akita, F., Shen, J.R.
Deposit date:2019-10-21
Release date:2020-05-20
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom
Nat Commun, 2020
3WP3
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XYLANASE 11C FROM TALAROMYCES CELLULOLYTICUS (FORMERLY KNOWN AS ACREMONIUM CELLULOLYTICUS)
Descriptor:Endo-1,4-beta-xylanase
Authors:Ishikawa, K., Inoue, H., Kataoka, M.
Deposit date:2014-01-09
Release date:2014-11-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of Talaromyces cellulolyticus (formerly known as Acremonium cellulolyticus) GH family 11 xylanase
Appl Biochem Biotechnol., 174, 2014
5GTH
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (DARK DATASET)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5GTI
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (TWO FLASH DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS5
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH DARK DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS6
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH TWO-FLASH DATASET
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 chlorophyll protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
6JLJ
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XFEL STRUCTURE OF CYANOBACTERIAL PHOTOSYSTEM II (DARK STATE, DATASET1)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
6JLK
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XFEL STRUCTURE OF CYANOBACTERIAL PHOTOSYSTEM II (1F STATE, DATASET1)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
6JLL
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XFEL STRUCTURE OF CYANOBACTERIAL PHOTOSYSTEM II (2F STATE, DATASET1)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
6JLM
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XFEL STRUCTURE OF CYANOBACTERIAL PHOTOSYSTEM II (DARK STATE, DATASET2)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
6JLN
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XFEL STRUCTURE OF CYANOBACTERIAL PHOTOSYSTEM II (1F STATE, DATASET2)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
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