Author results

2ZTT
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CRYSTAL STRUCTURE OF RNA POLYMERASE PB1-PB2 SUBUNITS FROM INFLUENZA A VIRUS
Descriptor:RNA-directed RNA polymerase catalytic subunit, Polymerase basic protein 2
Authors:Sugiyama, K., Obayashi, E., Park, S.-Y.
Deposit date:2008-10-08
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase
Embo J., 28, 2009
3A1G
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HIGH-RESOLUTION CRYSTAL STRUCTURE OF RNA POLYMERASE PB1-PB2 SUBUNITS FROM INFLUENZA A VIRUS
Descriptor:RNA-directed RNA polymerase catalytic subunit, Polymerase basic protein 2
Authors:Sugiyama, K., Park, S.-Y., Obayashi, E.
Deposit date:2009-04-02
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase
Embo J., 28, 2009
4N7N
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CAPTURING THE HAEMOGLOBIN ALLOSTERIC TRANSITION IN A SINGLE CRYSTAL FORM; CRYSTAL STRUCTURE OF FULL-LIGANDED HUMAN HAEMOGLOBIN WITH PHOSPHATE AT 2.75 A RESOLUTION.
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugiyama, K., Shibayama, N., Park, S.Y.
Deposit date:2013-10-16
Release date:2014-04-02
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (2.754 Å)
Cite:Capturing the hemoglobin allosteric transition in a single crystal form
J.Am.Chem.Soc., 136, 2014
4N7O
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CAPTURING THE HAEMOGLOBIN ALLOSTERIC TRANSITION IN A SINGLE CRYSTAL FORM; CRYSTAL STRUCTURE OF HALF-LIGANDED HUMAN HAEMOGLOBIN WITH PHOSPHATE AT 2.5 A RESOLUTION.
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING NI(II), ...
Authors:Sugiyama, K., Shibayama, N., Park, S.Y.
Deposit date:2013-10-16
Release date:2014-04-02
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Capturing the hemoglobin allosteric transition in a single crystal form
J.Am.Chem.Soc., 136, 2014
4N7P
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CAPTURING THE HAEMOGLOBIN ALLOSTERIC TRANSITION IN A SINGLE CRYSTAL FORM; CRYSTAL STRUCTURE OF HALF-LIGANDED HUMAN HAEMOGLOBIN WITHOUT PHOSPHATE AT 2.8 A RESOLUTION.
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING NI(II), ...
Authors:Sugiyama, K., Shibayama, N., Park, S.Y.
Deposit date:2013-10-16
Release date:2014-04-02
Last modified:2014-04-23
Method:X-RAY DIFFRACTION (2.809 Å)
Cite:Capturing the hemoglobin allosteric transition in a single crystal form
J.Am.Chem.Soc., 136, 2014
4OKV
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CRYSTAL STRUCTURE OF ANOPHELINE ANTI-PLATELET PROTEIN WITH FAB ANTIBODY
Descriptor:heavy chain of 8H7 mAb, light chain of 8H7 mAb, Anti-platelet aggregation protein
Authors:Park, S.Y., Sugiyama, K.
Deposit date:2014-01-23
Release date:2014-04-30
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The crystal structure of anopheles anti-platelet protein, a powerful anti-coagulant, in complex with an antibody
To be Published
1DHY
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KKS102 BPHC ENZYME
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T., Sugiyama, K., Narita, H., Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
5H2B
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STRUCTURE OF A NOVEL ANTIBODY G196
Descriptor:G196 antibody Heavy chain, G196 antibody Light chain
Authors:Park, S.Y., Sugiyama, K.
Deposit date:2016-10-14
Release date:2017-03-22
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:G196 epitope tag system: a novel monoclonal antibody, G196, recognizes the small, soluble peptide DLVPR with high affinity.
Sci Rep, 7, 2017
2GX0
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CRYSTAL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GFP-LIKE FLUORESCENT PROTEIN
Descriptor:fluorescent protein Dronpa
Authors:Hwang, K.Y., Nam, K.-H., Park, S.-Y., Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
2GX2
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CRYSTAL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GFP-LIKE FLUORESCENT PROTEIN DRONPA
Descriptor:fluorescent protein Dronpa, MAGNESIUM ION
Authors:Hwang, K.Y., Nam, K.-H., Park, S.-Y., Sugiyama, K.
Deposit date:2006-05-08
Release date:2007-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
3S65
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STRUCTURES AND OXYGEN AFFINITIES OF CRYSTALLINE HUMAN HEMOGLOBIN C (BETA6 LYS) IN THE R2 QUATERNARY STRUCTURES
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Shibayama, N., Sugiyama, K., Park, S.Y.
Deposit date:2011-05-25
Release date:2011-08-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Glu->Lys) in the R and R2 quaternary structure
To be Published
3S66
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STRUCTURES AND OXYGEN AFFINITIES OF CRYSTALLINE HUMAN HEMOGLOBIN C (BETA6 LYS) IN THE R QUATERNARY STRUCTURES
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Shibayama, N., Sugiyama, K., Park, S.Y.
Deposit date:2011-05-25
Release date:2011-08-03
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Glu->Lys) in the R and R2 quaternary structure
To be Published
3WX7
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CRYSTAL STRUCTURE OF COD
Descriptor:Chitin oligosaccharide deacetylase, CALCIUM ION, ZINC ION, ...
Authors:Park, S.-Y., Sugiyama, K., Hirano, T., Nishio, T.
Deposit date:2014-07-18
Release date:2014-12-03
Method:X-RAY DIFFRACTION (1.349 Å)
Cite:Structural and functional analysis of chitin oligosaccharide deacetylase from vivrio parahaemolyticus
To be Published
4EU2
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CRYSTAL STRUCTURE OF 20S PROTEASOME WITH NOVEL INHIBITOR K-7174
Descriptor:Proteasome component C7-alpha, Proteasome component Y7, Proteasome component Y13, ...
Authors:Kikuchi, J., Shibayama, N., Yamada, S., Wada, T., Nobuyoshi, M., Izumi, T., Akutsu, M., Kano, Y., Ohki, M., Sugiyama, K., Park, S.-Y., Furukawa, Y.
Deposit date:2012-04-25
Release date:2013-05-01
Method:X-RAY DIFFRACTION (2.509 Å)
Cite:Homopiperazine derivatives as a novel class of proteasome inhibitors with a unique mode of proteasome binding.
Plos One, 8, 2013
4H4P
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175Q/Q177K MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4Q
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175Q/Q177K (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FORMIC ACID, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4R
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175C/Q177G MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4S
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175C/Q177G MUTANT (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, GLYCEROL, FORMIC ACID, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4T
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 T176R MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4U
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 T176R MUTANT (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4V
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175C/T176R/Q177G MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4W
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175C/T176R/Q177G MUTANT (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4X
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175A/T176R/Q177G MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4Y
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175A/T176R/Q177G MUTANT (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4Z
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175Q/T176R/Q177G MUTANT (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Nishizawa, A., Harada, A., Senda, M., Tachihara, Y., Muramatsu, D., Kishigami, S., Mori, S., Sugiyama, K., Senda, T., Kimura, S.
Deposit date:2012-09-18
Release date:2013-10-09
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
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