Author results

1WU3
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CRYSTAL STRUCTURE OF RECOMBINANT MURINE INTERFERON BETA
Descriptor:Interferon beta
Authors:Senda, T., Saitoh, S., Mitsui, Y.
Deposit date:2004-12-01
Release date:2004-12-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Refined crystal structure of recombinant murine interferon-beta at 2.15 A resolution
J.Mol.Biol., 253, 1995
1D7Y
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CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsui, Y.
Deposit date:1999-10-21
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsuidagger, Y.
Deposit date:2000-06-06
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1DHY
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KKS102 BPHC ENZYME
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T., Sugiyama, K., Narita, H., Mitsui, Y.
Deposit date:1995-07-07
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
2GQW
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR0
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM, NAD+ COMPLEX)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, ADENOSINE-5'-DIPHOSPHATE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR1
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (HYDROQUINONE)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR2
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, ADENOSINE-5-DIPHOSPHORIBOSE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR3
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2YVF
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE BPHA4 (HYDROQUINONE)
Descriptor:Ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVG
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (BLUE-SEMIQUINONE)
Descriptor:Ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVJ
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CRYSTAL STRUCTURE OF THE FERREDOXIN-FERREDOXIN REDUCTASE (BPHA3-BPHA4)COMPLEX
Descriptor:Ferredoxin reductase, Biphenyl dioxygenase ferredoxin subunit, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
1IFA
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THREE-DIMENSIONAL CRYSTAL STRUCTURE OF RECOMBINANT MURINE INTERFERON-BETA
Descriptor:INTERFERON-BETA, ASPARAGINE
Authors:Mitsui, Y., Senda, T., Matsuda, S., Kawano, G., Nakamura, K.T., Shimizu, H.
Deposit date:1991-10-29
Release date:1994-01-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three-dimensional crystal structure of recombinant murine interferon-beta.
EMBO J., 11, 1992
5XXP
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CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
Descriptor:LysR-type regulatory protein, DNA (25-MER)
Authors:Senda, T., Senda, M.
Deposit date:2017-07-04
Release date:2018-01-17
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J., 285, 2018
1EIL
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, SULFATE ION, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-26
Release date:2001-02-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIR
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION, BIPHENYL-2,3-DIOL
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIQ
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2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
Descriptor:2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION
Authors:Senda, T.
Deposit date:2000-02-28
Release date:2001-02-28
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1QG7
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STROMA CELL-DERIVED FACTOR-1ALPHA (SDF-1ALPHA)
Descriptor:STROMAL CELL-DERIVED FACTOR 1 ALPHA, SULFATE ION
Authors:Senda, T., Nandhagopal, N., Sugimoto, K., Mitsui, Y.
Deposit date:1999-04-21
Release date:2001-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of recombinant native SDF-1alpha with additional mutagenesis studies: an attempt at a more comprehensive interpretation of accumulated structure-activity relationship data.
J.Interferon Cytokine Res., 20, 2000
2E4P
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CRYSTAL STRUCTURE OF BPHA3 (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, SULFATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2E4Q
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CRYSTAL STRUCTURE OF BPHA3 (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2E50
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CRYSTAL STRUCTURE OF SET/TAF-1BETA/INHAT
Descriptor:Protein SET, TREHALOSE
Authors:Muto, S., Senda, M., Senda, T., Horikoshi, M.
Deposit date:2006-12-18
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity
Proc.Natl.Acad.Sci.Usa, 104, 2007
3WZZ
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CRYSTAL STRUCTURE OF PIP4KIIBETA
Descriptor:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
Authors:Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell, 61, 2016
3X01
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CRYSTAL STRUCTURE OF PIP4KIIBETA COMPLEX WITH AMP
Descriptor:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, ADENOSINE MONOPHOSPHATE
Authors:Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
Deposit date:2014-10-09
Release date:2015-10-14
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell, 61, 2016
3X02
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CRYSTAL STRUCTURE OF PIP4KIIBETA COMPLEX WITH GMP
Descriptor:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, GUANOSINE-5'-MONOPHOSPHATE
Authors:Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
Deposit date:2014-10-09
Release date:2015-10-14
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell, 61, 2016
3X03
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CRYSTAL STRUCTURE OF PIP4KIIBETA COMPLEX WITH AMPPNP
Descriptor:Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Takeuchi, K., Lo, Y.H., Sumita, K., Senda, M., Terakawa, J., Dimitoris, A., Locasale, J.W., Sasaki, M., Yoshino, H., Zhang, Y., Kahoud, E.R., Takano, T., Yokota, T., Emerling, B., Asara, J.A., Ishida, T., Shimada, I., Daikoku, T., Cantley, L.C., Senda, T., Sasaki, A.T.
Deposit date:2014-10-09
Release date:2015-10-14
Last modified:2016-02-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
Mol.Cell, 61, 2016