Author results

1VCV
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STRUCTURE OF 2-DEOXYRIBOSE-5-PHOSPHATE ALDOLASE FROM PYROBACULUM AEROPHILUM
Descriptor:Probable deoxyribose-phosphate aldolase, ZINC ION
Authors:Sakuraba, H., Ohshima, T., Tsuge, H.
Deposit date:2004-03-15
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Sequential aldol condensation catalyzed by hyperthermophilic 2-deoxy-d-ribose-5-phosphate aldolase
Appl.Environ.Microbiol., 73, 2007
2ZC0
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CRYSTAL STRUCTURE OF AN ARCHAEAL ALANINE:GLYOXYLATE AMINOTRANSFERASE
Descriptor:Alanine glyoxylate transaminase, ZINC ION, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, ...
Authors:Sakuraba, H., Yoneda, K., Tsuge, H., Ohshima, T.
Deposit date:2007-10-31
Release date:2008-06-17
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of an archaeal alanine:glyoxylate aminotransferase
Acta Crystallogr.,Sect.D, 64, 2008
1WZU
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CRYSTAL STRUCTURE OF QUINOLINATE SYNTHASE (NADA)
Descriptor:Quinolinate synthetase A, D-MALATE
Authors:Sakuraba, H.
Deposit date:2005-03-09
Release date:2005-06-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the NAD Biosynthetic Enzyme Quinolinate Synthase
J.Biol.Chem., 280, 2005
2ZVR
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CRYSTAL STRUCTURE OF A D-TAGATOSE 3-EPIMERASE-RELATED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:Uncharacterized protein TM_0416
Authors:Sakuraba, H., Ohshima, T.
Deposit date:2008-11-14
Release date:2009-03-10
Last modified:2012-04-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a D-tagatose 3-epimerase-related protein from the hyperthermophilic bacterium Thermotoga maritima
Acta Crystallogr.,Sect.F, 65, 2009
3A9G
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CRYSTAL STRUCTURE OF PQQ-DEPENDENT SUGAR DEHYDROGENASE APO-FORM
Descriptor:Putative uncharacterized protein, CALCIUM ION, TREHALOSE
Authors:Sakuraba, H., Yokono, K., Yoneda, K., Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
3A9H
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CRYSTAL STRUCTURE OF PQQ-DEPENDENT SUGAR DEHYDROGENASE HOLO-FORM
Descriptor:Putative uncharacterized protein, CALCIUM ION, TREHALOSE, ...
Authors:Sakuraba, H., Yokono, K., Yoneda, K., Ohshima, T.
Deposit date:2009-10-26
Release date:2010-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum
Arch.Biochem.Biophys., 502, 2010
3AW5
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STRUCTURE OF A MULTICOPPER OXIDASE FROM THE HYPERTHERMOPHILIC ARCHAEON PYROBACULUM AEROPHILUM
Descriptor:Multicopper oxidase, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Sakuraba, H., Ohshima, T., Yoneda, K.
Deposit date:2011-03-10
Release date:2011-06-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a multicopper oxidase from the hyperthermophilic archaeon Pyrobaculum aerophilum
Acta Crystallogr.,Sect.F, 67, 2011
3AW9
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STRUCTURE OF UDP-GALACTOSE 4-EPIMERASE MUTANT
Descriptor:NAD-dependent epimerase/dehydratase, GALACTOSE-URIDINE-5'-DIPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Sakuraba, H., Kawai, T., Yoneda, K., Ohshima, T.
Deposit date:2011-03-15
Release date:2012-02-29
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of UDP-galactose 4-epimerase mutant
To be Published
3AXB
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STRUCTURE OF A DYE-LINKED L-PROLINE DEHYDROGENASE FROM THE AEROBIC HYPERTHERMOPHILIC ARCHAEON, AEROPYRUM PERNIX
Descriptor:Putative oxidoreductase, PROLINE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Sakuraba, H., Ohshima, T., Satomura, T., Yoneda, K., Hara, Y.
Deposit date:2011-04-01
Release date:2012-04-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012
3ICP
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CRYSTAL STRUCTURE OF UDP-GALACTOSE 4-EPIMERASE
Descriptor:NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Sakuraba, H., Kawai, T., Yoneda, K., Ohshima, T.
Deposit date:2009-07-18
Release date:2010-07-21
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of UDP-galactose 4-epimerase
To be Published
3KO8
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CRYSTAL STRUCTURE OF UDP-GALACTOSE 4-EPIMERASE
Descriptor:NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION
Authors:Sakuraba, H., Kawai, T., Yoneda, K., Ohshima, T.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2011-08-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of UDP-galactose 4-epimerase from the hyperthermophilic archaeon Pyrobaculum calidifontis
Arch.Biochem.Biophys., 512, 2011
3VQR
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STRUCTURE OF A DYE-LINKED L-PROLINE DEHYDROGENASE MUTANT FROM THE AEROBIC HYPERTHERMOPHILIC ARCHAEON, AEROPYRUM PERNIX
Descriptor:Putative oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, ACETATE ION, ...
Authors:Sakuraba, H., Ohshima, T., Satomura, T., Yoneda, K.
Deposit date:2012-03-29
Release date:2012-04-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012
3VTF
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STRUCTURE OF A UDP-GLUCOSE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON PYROBACULUM ISLANDICUM
Descriptor:UDP-glucose 6-dehydrogenase, URIDINE-5'-DIPHOSPHATE-GLUCOSE, 1,2-ETHANEDIOL
Authors:Sakuraba, H., Ohshima, T., Yoneda, K.
Deposit date:2012-05-29
Release date:2012-09-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a UDP-glucose dehydrogenase from the hyperthermophilic archaeon Pyrobaculum islandicum.
Acta Crystallogr.,Sect.F, 68, 2012
1N7K
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UNIQUE TETRAMERIC STRUCTURE OF DEOXYRIBOSE PHOSPHATE ALDOLASE FROM AEROPYRUM PERNIX
Descriptor:deoxyribose-phosphate aldolase
Authors:Tsuge, H., Sakuraba, H., Shimoya, I., Katunuma, N., Ago, H., Miyano, M., Ohshima, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-15
Release date:2003-03-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The First Crystal Structure of Archaeal Aldolase. UNIQUE TETRAMERIC STRUCTURE of 2-DEOXY-D-RIBOSE-5-PHOSPHATE ALDOLASE FROM THE HYPERTHERMOPHILIC ARCHAEA Aeropyrum pernix.
J.Biol.Chem., 278, 2003
2E5V
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CRYSTAL STRUCTURE OF L-ASPARTATE OXIDASE FROM HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS TOKODAII
Descriptor:L-aspartate oxidase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yoneda, K., Sakuraba, H., Asai, I., Tsuge, H., Katunuma, N., Ohshima, T.
Deposit date:2006-12-25
Release date:2008-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure of l-aspartate oxidase from the hyperthermophilic archaeon Sulfolobus tokodaii
Biochim.Biophys.Acta, 1784, 2008
3WYB
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STRUCTURE OF A MESO-DIAMINOPIMELATE DEHYDROGENASE
Descriptor:Meso-diaminopimelate D-dehydrogenase
Authors:Sakuraba, H., Akita, H., Ohshima, T.
Deposit date:2014-08-25
Release date:2015-05-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insight into the thermostable NADP(+)-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus
Acta Crystallogr.,Sect.D, 71, 2015
3WYC
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STRUCTURE OF A MESO-DIAMINOPIMELATE DEHYDROGENASE IN COMPLEX WITH NADP
Descriptor:Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID
Authors:Sakuraba, H., Akita, H., Ohshima, T.
Deposit date:2014-08-25
Release date:2015-05-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural insight into the thermostable NADP(+)-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus
Acta Crystallogr.,Sect.D, 71, 2015
5GZ1
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STRUCTURE OF SUBSTRATE/COFACTOR-FREE D-AMINO ACID DEHYDROGENASE
Descriptor:Meso-diaminopimelate D-dehydrogenase
Authors:Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
5GZ3
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STRUCTURE OF D-AMINO ACID DEHYDROGENASE IN COMPLEX WITH NADP
Descriptor:Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 1,2-ETHANEDIOL
Authors:Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
5GZ6
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STRUCTURE OF D-AMINO ACID DEHYDROGENASE IN COMPLEX WITH NADPH AND 2-KETO-6-AMINOCAPRONIC ACID
Descriptor:Meso-diaminopimelate D-dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 6-azanyl-2-oxidanylidene-hexanoic acid, ...
Authors:Sakuraba, H., Seto, T., Hayashi, J., Akita, H., Yoneda, K., Ohshima, T.
Deposit date:2016-09-26
Release date:2017-04-12
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
3WIC
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STRUCTURE OF A SUBSTRATE/COFACTOR-UNBOUND GLUCOSE DEHYDROGENASE
Descriptor:Glucose 1-dehydrogenase, ZINC ION, S-1,2-PROPANEDIOL, ...
Authors:Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
Deposit date:2013-09-10
Release date:2014-05-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium
Acta Crystallogr.,Sect.D, 70, 2014
3WID
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STRUCTURE OF A GLUCOSE DEHYDROGENASE T277F MUTANT IN COMPLEX WITH NADP
Descriptor:Glucose 1-dehydrogenase, ZINC ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
Deposit date:2013-09-10
Release date:2014-05-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium
Acta Crystallogr.,Sect.D, 70, 2014
3WIE
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STRUCTURE OF A GLUCOSE DEHYDROGENASE T277F MUTANT IN COMPLEX WITH D-GLUCOSE AND NAADP
Descriptor:Glucose 1-dehydrogenase, ZINC ION, [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(3-carboxypyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate, ...
Authors:Sakuraba, H., Kanoh, Y., Yoneda, K., Ohshima, T.
Deposit date:2013-09-10
Release date:2014-05-14
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium
Acta Crystallogr.,Sect.D, 70, 2014
4XB1
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HYPERTHERMOPHILIC ARCHAEAL HOMOSERINE DEHYDROGENASE IN COMPLEX WITH NADPH
Descriptor:319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SODIUM ION, ...
Authors:Sakuraba, H., Inoue, S., Yoneda, K., Ohshima, T.
Deposit date:2014-12-16
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases
Sci Rep, 5, 2015
4XB2
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HYPERTHERMOPHILIC ARCHAEAL HOMOSERINE DEHYDROGENASE MUTANT IN COMPLEX WITH NADPH
Descriptor:319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, L-HOMOSERINE, ...
Authors:Sakuraba, H., Inoue, S., Yoneda, K., Ohshima, T.
Deposit date:2014-12-16
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases
Sci Rep, 5, 2015
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