Protein Data Bank Japan

Author results

CRYSTAL STRUCTURE OF YELLOW FLUORESCENT PROTEIN ZFP538 K66M GREEN MUTANT
Descriptor:	fluorescent protein FP538, BETA-MERCAPTOETHANOL
Authors:	Remington, S.J., Wachter, R.M., Yarbrough, D.K., Branchaud, B., Anderson, D.C., Kallio, K., Lukyanov, K.A.
Deposit date:	2004-08-25
Release date:	2005-02-08
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry, 44, 2005

1XAE

CRYSTAL STRUCTURE OF WILD TYPE YELLOW FLUORESCENT PROTEIN ZFP538 FROM ZOANTHUS
Descriptor:	fluorescent protein FP538, BETA-MERCAPTOETHANOL
Authors:	Remington, S.J., Wachter, R.M., Yarbrough, D.K., Branchaud, B., Anderson, D.C., Kallio, K., Lukyanov, K.A.
Deposit date:	2004-08-25
Release date:	2005-02-08
Last modified:	2018-04-04
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry, 44, 2005

5F9G

PNGFP1.5-Y.CRO: CIRCULARLY PERMUTED GREEN FLUORESCENT PROTEIN (WITH A TYROSINE-DERIVED CHROMOPHORE)
Descriptor:	pnGFP1.5-Y.Cro,Green fluorescent protein
Authors:	Remington, S.J.
Deposit date:	2015-12-09
Release date:	2016-02-03
Last modified:	2017-09-27
Method:	X-RAY DIFFRACTION (2.772 Å)
Cite:	pnGFP: circularly permuted green fluorescent protein To Be Published

4OGS

CRYSTAL STRUCTURE OF GFP S205A/T203V AT 2.2 A RESOLUTION
Descriptor:	Green fluorescent protein, CHLORIDE ION
Authors:	Remington, S.J., Saif, M.
Deposit date:	2014-01-16
Release date:	2014-05-14
Last modified:	2014-06-18
Method:	X-RAY DIFFRACTION (2.21 Å)
Cite:	Insight into the structure and the mechanism of the slow proton transfer in the GFP double mutant T203V/S205A. Phys Chem Chem Phys, 16, 2014

5HZO

GFP MUTANT S205G
Descriptor:	Green fluorescent protein, D-MALATE, UNDECYL-MALTOSIDE
Authors:	Remington, S.J., Trujillo, K.
Deposit date:	2016-02-02
Release date:	2016-02-17
Last modified:	2017-09-27
Method:	X-RAY DIFFRACTION (2.49 Å)
Cite:	Ultrafast Dynamics and Mechanisms of Proton Transfer in the GFP S205G Mutant To Be Published

1AL6

CHICKEN CITRATE SYNTHASE COMPLEX WITH N-HYDROXYAMIDO-COA AND OXALOACETATE
Descriptor:	CITRATE SYNTHASE, OXALOACETATE ION, N-HYDROXYAMIDOCARBOXYMETHYLDETHIA COENZYME *A
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1997-06-12
Release date:	1997-12-24
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Mechanisms of Enzyme-Catalyzed Deprotonation of Acetyl-Coenzyme A To be Published

1AMZ

CHICKEN CITRATE SYNTHASE COMPLEX WITH NITROMETHYLDE-COA AND MALATE
Descriptor:	CITRATE SYNTHASE, D-MALATE, NITROMETHYLDETHIA COENZYME A
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1997-06-19
Release date:	1997-12-24
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Mechanisms of Enzyme-Catalyzed Deprotonation of Acetyl-Coenzyme A To be Published

1CSR

ALPHA-FLUORO ACID AND ALPHA-FLUORO AMIDE ANALOGS OF ACETYL-COA AS INHIBITORS OF OF CITRATE SYNTHASE: EFFECT OF PKA MATCHING ON BINDING AFFINITY AND HYDROGEN BOND LENGTH
Descriptor:	CITRATE SYNTHASE, OXALOACETATE ION, ALPHA-FLUORO-AMIDOCARBOXYMETHYLDETHIA COENZYME A COMPLEX
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1995-08-04
Release date:	1995-10-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	alpha-Fluoro acid and alpha-fluoro amide analogs of acetyl-CoA as inhibitors of citrate synthase: effect of pKa matching on binding affinity and hydrogen bond length. Biochemistry, 34, 1995

1CSS

ALPHA-FLUORO ACID AND ALPHA-FLUORO AMIDE ANALOGS OF ACETYL-COA AS INHIBITORS OF OF CITRATE SYNTHASE: EFFECT OF PKA MATCHING ON BINDING AFFINITY AND HYDROGEN BOND LENGTH
Descriptor:	CITRATE SYNTHASE, OXALOACETATE ION, ALPHA-FLUORO-CARBOXYMETHYLDETHIA COENZYME A COMPLEX
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1995-08-04
Release date:	1995-10-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	alpha-Fluoro acid and alpha-fluoro amide analogs of acetyl-CoA as inhibitors of citrate synthase: effect of pKa matching on binding affinity and hydrogen bond length. Biochemistry, 34, 1995

1BU6

CRYSTAL STRUCTURES OF ESCHERICHIA COLI GLYCEROL KINASE AND THE MUTANT A65T IN AN INACTIVE TETRAMER: CONFORMATIONAL CHANGES AND IMPLICATIONS FOR ALLOSTERIC REGULATION
Descriptor:	PROTEIN (GLYCEROL KINASE), SULFATE ION, GLYCEROL
Authors:	Feese, M.D., Faber, H.R., Bystrom, C.E., Pettigrew, D.W., Remington, S.J.
Deposit date:	1998-08-30
Release date:	1998-09-16
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2.37 Å)
Cite:	Glycerol kinase from Escherichia coli and an Ala65-->Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation. Structure, 6, 1998

1C4F

GREEN FLUORESCENT PROTEIN S65T AT PH 4.6
Descriptor:	GREEN FLUORESCENT PROTEIN
Authors:	Elsliger, M.A., Wachter, R.M., Kallio, K., Hanson, G.T., Remington, S.J.
Deposit date:	1999-08-21
Release date:	1999-08-31
Last modified:	2017-10-04
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Structural and spectral response of green fluorescent protein variants to changes in pH. Biochemistry, 38, 1999

1GLF

CRYSTAL STRUCTURES OF ESCHERICHIA COLI GLYCEROL KINASE AND THE MUTANT A65T IN AN INACTIVE TETRAMER: CONFORMATIONAL CHANGES AND IMPLICATIONS FOR ALLOSTERIC REGULATION
Descriptor:	PROTEIN (GLYCEROL KINASE), PHOSPHATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:	Feese, M.D., Faber, H.R., Bystrom, C.E., Pettigrew, D.W., Remington, S.J.
Deposit date:	1998-08-30
Release date:	1998-10-16
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2.62 Å)
Cite:	Glycerol kinase from Escherichia coli and an Ala65-->Thr mutant: the crystal structures reveal conformational changes with implications for allosteric regulation. Structure, 6, 1998

1BCR

COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, ANTIPAIN, AND ARGININE AT ROOM TEMPERATURE
Descriptor:	SERINE CARBOXYPEPTIDASE II, ANTIPAIN, N-ACETYL-D-GLUCOSAMINE, ...
Authors:	Bullock, T.L., Remington, S.J.
Deposit date:	1995-11-03
Release date:	1996-03-08
Last modified:	2013-06-05
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Peptide aldehyde complexes with wheat serine carboxypeptidase II: implications for the catalytic mechanism and substrate specificity. J.Mol.Biol., 255, 1996

1BCS

COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, CHYMOSTATIN, AND ARGININE AT 100 DEGREES KELVIN
Descriptor:	SERINE CARBOXYPEPTIDASE II, CHYMOSTATIN A, ARGININE, ...
Authors:	Bullock, T.L., Remington, S.J.
Deposit date:	1995-11-03
Release date:	1996-03-08
Last modified:	2013-02-27
Method:	X-RAY DIFFRACTION (2.08 Å)
Cite:	Peptide aldehyde complexes with wheat serine carboxypeptidase II: implications for the catalytic mechanism and substrate specificity. J.Mol.Biol., 255, 1996

1CSH

A VERY SHORT HYDROGEN BOND PROVIDES ONLY MODERATE STABILIZATION OF AN ENZYME: INHIBITOR COMPLEX OF CITRATE SYNTHASE
Descriptor:	CITRATE SYNTHASE, OXALOACETATE ION, AMIDOCARBOXYMETHYLDETHIA COENZYME *A
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-04-30
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994

1CSI

A VERY SHORT HYDROGEN BOND PROVIDES ONLY MODERATE STABILIZATION OF AN ENZYME: INHIBITOR COMPLEX OF CITRATE SYNTHASE
Descriptor:	CITRATE SYNTHASE, OXALOACETATE ION, CARBOXYMETHYLDETHIA COENZYME *A
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-04-30
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. Biochemistry, 33, 1994

1EMG

GREEN FLUORESCENT PROTEIN (65-67 REPLACED BY CRO, S65T SUBSTITUTION, Q80R)
Descriptor:	PROTEIN (GREEN FLUORESCENT PROTEIN)
Authors:	Elsliger, M.A., Wachter, R.M., Kallio, K., Hanson, G.T., Remington, S.J.
Deposit date:	1998-11-12
Release date:	1999-05-12
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural and spectral response of green fluorescent protein variants to changes in pH. Biochemistry, 38, 1999

1WHS

STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION
Descriptor:	SERINE CARBOXYPEPTIDASE II, N-ACETYL-D-GLUCOSAMINE, ALPHA-L-FUCOSE, ...
Authors:	Bullock, T.L., Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-06-22
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of the complex of L-benzylsuccinate with wheat serine carboxypeptidase II at 2.0-A resolution. Biochemistry, 33, 1994

1WHT

STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION
Descriptor:	SERINE CARBOXYPEPTIDASE II, N-ACETYL-D-GLUCOSAMINE, ALPHA-L-FUCOSE, ...
Authors:	Bullock, T.L., Remington, S.J.
Deposit date:	1994-03-07
Release date:	1994-06-22
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of the complex of L-benzylsuccinate with wheat serine carboxypeptidase II at 2.0-A resolution. Biochemistry, 33, 1994

3SC2

REFINED ATOMIC MODEL OF WHEAT SERINE CARBOXYPEPTIDASE II AT 2.2-ANGSTROMS RESOLUTION
Descriptor:	SERINE CARBOXYPEPTIDASE II (CPDW-II), N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:	Liao, D.-I., Remington, S.J.
Deposit date:	1992-07-01
Release date:	1993-10-31
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Refined atomic model of wheat serine carboxypeptidase II at 2.2-A resolution. Biochemistry, 31, 1992

6CSC

CHICKEN CITRATE SYNTHASE COMPLEX WITH TRIFLUOROACETONYL-COA AND CITRATE
Descriptor:	CITRATE SYNTHASE, TRIFLUOROACETONYL COENZYME A, CITRIC ACID
Authors:	Usher, K.C., Remington, S.J.
Deposit date:	1997-06-19
Release date:	1997-12-24
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	Trifluoroacetonyl Coenzyme A, an Inhibitor of Citrate Synthase, Binds in a Combination of Productive and Nonproductive Modes To be Published

1CSC

STRUCTURE OF TERNARY COMPLEXES OF CITRATE SYNTHASE WITH D-AND L-MALATE: MECHANISTIC IMPLICATIONS
Descriptor:	CITRATE SYNTHASE, CARBOXYMETHYL COENZYME *A, (2S)-2-hydroxybutanedioic acid
Authors:	Karpusas, M., Holland, D., Remington, S.J.
Deposit date:	1990-05-07
Release date:	1991-04-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991

2CSC

STRUCTURE OF TERNARY COMPLEXES OF CITRATE SYNTHASE WITH D-AND L-MALATE: MECHANISTIC IMPLICATIONS
Descriptor:	CITRATE SYNTHASE, CARBOXYMETHYL COENZYME *A, D-MALATE
Authors:	Karpusas, M., Holland, D., Remington, S.J.
Deposit date:	1990-05-07
Release date:	1991-04-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991

3CSC

STRUCTURE OF TERNARY COMPLEXES OF CITRATE SYNTHASE WITH D-AND L-MALATE: MECHANISTIC IMPLICATIONS
Descriptor:	CITRATE SYNTHASE, ACETYL COENZYME *A, (2S)-2-hydroxybutanedioic acid
Authors:	Karpusas, M., Holland, D., Remington, S.J.
Deposit date:	1990-05-07
Release date:	1991-04-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991

4CSC

STRUCTURE OF TERNARY COMPLEXES OF CITRATE SYNTHASE WITH D-AND L-MALATE: MECHANISTIC IMPLICATIONS
Descriptor:	CITRATE SYNTHASE, D-MALATE, ACETYL COENZYME *A
Authors:	Karpusas, M., Holland, D., Remington, S.J.
Deposit date:	1990-05-07
Release date:	1991-04-15
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications. Biochemistry, 30, 1991

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