Author results

124D
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STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA
Descriptor:DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3'), RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3')
Authors:Fedoroff, O.Y., Salazar, M., Reid, B.R.
Deposit date:1993-05-07
Release date:1993-10-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA
J.Mol.Biol., 233, 1993
1GTC
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HUMAN IMMUNODEFICIENCY VIRUS-1 OKAZAKI FRAGMENT, DNA-RNA CHIMERA, NMR, 11 STRUCTURES
Descriptor:DNA (5'-D(*GP*CP*AP*GP*TP*GP*GP*C)-3'), DNA/RNA (5'-R(*GP*CP*CP*A)-D(P*CP*TP*GP*C)-3')
Authors:Fedoroff, O.Y., Salazar, M., Reid, B.R.
Deposit date:1996-06-13
Release date:1996-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural variation among retroviral primer-DNA junctions: solution structure of the HIV-1 (-)-strand Okazaki fragment r(gcca)d(CTGC).d(GCAGTGGC).
Biochemistry, 35, 1996
103D
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THE UNUSUAL STRUCTURE OF THE HUMAN CENTROMERE (GGA)2 MOTIF: UNPAIRED GUANOSINE RESIDUES STACKED BETWEEN SHEARED G(DOT)A PAIRS
Descriptor:DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*GP*AP*AP*C)-3')
Authors:Chou, S.-H., Zhu, L., Reid, B.R.
Deposit date:1994-12-16
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The unusual structure of the human centromere (GGA)2 motif. Unpaired guanosine residues stacked between sheared G.A pairs.
J.Mol.Biol., 244, 1994
104D
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DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN
Descriptor:DNA/RNA (5'-R(*CP*GP*CP*G)-D(P*TP*AP*TP*AP*CP*GP*CP*G)-3')
Authors:Zhu, L., Salazar, M., Reid, B.R.
Deposit date:1994-12-16
Release date:1995-03-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2.
Biochemistry, 34, 1995
132D
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SOLUTION STRUCTURE OF THE TN AN DNA DUPLEX GCCGTTAACGGC CONTAINING THE HPA I RESTRICTION SITE
Descriptor:DNA (5'-D(P*GP*CP*CP*GP*TP*TP*AP*AP*CP*GP*GP*C)-3')
Authors:Kim, S.-G., Reid, B.R.
Deposit date:1993-06-24
Release date:1994-01-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site.
Biochemistry, 31, 1992
169D
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THE SOLUTION STRUCTURE OF THE R(GCG)D(TATACCC):D(GGGTATACGC) OKAZAKI FRAGMENT CONTAINS TWO DISTINCT DUPLEX MORPHOLOGIES CONNECTED BY A JUNCTION
Descriptor:DNA (5'-D(*GP*GP*GP*TP*AP*TP*AP*CP*GP*C)-3'), DNA/RNA (5'-R(*GP*CP*G)-D(P*TP*AP*TP*AP*CP*CP*C)-3')
Authors:Salazar, M., Fedoroff, O.Y., Zhu, L., Reid, B.R.
Deposit date:1994-04-11
Release date:1994-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the r(gcg)d(TATACCC):d(GGGTATACGC) Okazaki fragment contains two distinct duplex morphologies connected by a junction.
J.Mol.Biol., 241, 1994
175D
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THE DNA SEQUENCE GCGAATGAGC CONTAINING THE HUMAN CENTROMERE CORE SEQUENCE GAAT FORMS A SELF-COMPLEMENTARY DUPLEX WITH SHEARED G:A PAIRS IN SOLUTION
Descriptor:DNA (5'-D(*GP*CP*GP*AP*AP*TP*GP*AP*GP*C)-3')
Authors:Chou, S.-H., Cheng, J.-W., Fedoroff, O., Reid, B.R.
Deposit date:1994-04-29
Release date:1994-09-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G.A pairs in solution.
J.Mol.Biol., 241, 1994
1BJH
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HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES
Descriptor:DNA (5'-D(*GP*TP*AP*CP*AP*AP*AP*GP*TP*AP*C)-3')
Authors:Chou, S.-H., Zhu, L., Gao, Z., Cheng, J.-W., Reid, B.R.
Deposit date:1997-07-25
Release date:1997-12-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Hairpin loops consisting of single adenine residues closed by sheared A.A and G.G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin.
J.Mol.Biol., 264, 1996
1C11
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INTERCALATED D(TCCCGTTTCCA) DIMER, NMR, 7 STRUCTURES
Descriptor:DNA (5'-D(*TP*CP*CP*CP*GP*TP*TP*TP*CP*CP*A)-3')
Authors:Gallego, J., Chou, S.H., Reid, B.R.
Deposit date:1998-07-15
Release date:1998-07-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer.
J.Mol.Biol., 273, 1997
1CX3
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SOLUTION STRUCTURE OF A COMPLEX BETWEEN D(ATGCAT)2 AND THE ANTITUMOR BISNAPHTHALIMIDE LU-79553
Descriptor:DNA (5'-D(*AP*TP*GP*CP*AP*T)-3'), N,N'-(3,7-DIAZANONYLENE)-BIS-NAPHTHALIMIDE
Authors:Gallego, J., Reid, B.R.
Deposit date:1999-08-27
Release date:1999-11-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamics of a complex between DNA and the antitumor bisnaphthalimide LU-79553: intercalated ring flipping on the millisecond time scale.
Biochemistry, 38, 1999
1D68
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SOLUTION STRUCTURE OF [D(GCGTATACGC)]2
Descriptor:DNA (5'-D(P*GP*CP*GP*TP*AP*TP*AP*CP*GP*C)-3')
Authors:Cheng, J.-W., Chou, S.-H., Salazar, M., Reid, B.R.
Deposit date:1992-04-15
Release date:1993-04-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of [d(GCGTATACGC)]2.
J.Mol.Biol., 228, 1992
1D69
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SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2: ADJACENT G:A MISMATCHES STABILIZED BY CROSS-STRAND BASE-STACKING AND BII PHOSPHATE GROUPS
Descriptor:DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3')
Authors:Chou, S.-H., Cheng, J.-W., Reid, B.R.
Deposit date:1992-04-15
Release date:1993-04-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups.
J.Mol.Biol., 228, 1992
1DDP
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SOLUTION STRUCTURE OF A CISPLATIN-INDUCED [CATAGCTATG]2 INTERSTRAND CROSS-LINK
Descriptor:DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3'), Cisplatin
Authors:Zhu, L., Huang, H., Reid, B.R., Drobny, G.P., Hopkins, P.B.
Deposit date:1995-10-26
Release date:1996-03-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a cisplatin-induced DNA interstrand cross-link.
Science, 270, 1995
1NXR
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HIV-1 POLYPURINE HYBRID, R(GAGGACUG):D(CAGTCCTC), NMR, 18 STRUCTURES
Descriptor:DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*C)-3'), RNA (5'-R(*GP*AP*GP*GP*AP*CP*UP*G)-3')
Authors:Fedoroff, O.Y., Ge, Y., Reid, B.R.
Deposit date:1997-02-21
Release date:1997-07-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of r(gaggacug):d(CAGTCCTC) hybrid: implications for the initiation of HIV-1 (+)-strand synthesis.
J.Mol.Biol., 269, 1997
1OKA
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RNA/DNA CHIMERA, NMR
Descriptor:RNA/DNA CHIMERA (R(CCCA)D(AATGA)(DOT)D(TCATTTGGG))
Authors:Salazar, M., Fedoroff, O.Y., Reid, B.R.
Deposit date:1996-04-19
Release date:1996-11-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of chimeric duplex junctions: solution conformation of the retroviral Okazaki-like fragment r(ccca)d(AATGA).d(TCATTTGGG) from Moloney murine leukemia virus.
Biochemistry, 35, 1996
1S9N
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SOLUTION STRUCTURE OF THE NITROUS ACID (G)-(G) CROSS-LINKED DNA DODECAMER DUPLEX GCATCC(G)GATGC
Descriptor:5'-D(*GP*CP*AP*TP*CP*CP*GP*GP*AP*TP*GP*C)-3'
Authors:Edfeldt, N.B.F., Harwood, E.A., Sigurdsson, S.T., Hopkins, P.B., Reid, B.R.
Deposit date:2004-02-05
Release date:2005-06-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a nitrous acid induced DNA interstrand cross-link
Nucleic Acids Res., 32, 2004
1S9O
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SOLUTION STRUCTURE OF THE NITROUS ACID INDUCED DNA INTERSTRAND CROSS-LINKED DODECAMER DUPLEX CGCTAC(G)TAGCG WITH THE CROSS-LINKED GUANINES DENOTED (G)
Descriptor:5'-D(*CP*GP*CP*TP*AP*CP*GP*TP*AP*GP*CP*G)-3'
Authors:Edfeldt, N.B., Harwood, E.A., Sigurdsson, S.T., Hopkins, P.B., Reid, B.R.
Deposit date:2004-02-05
Release date:2005-11-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a nitrous acid induced DNA interstrand cross-link.
Nucleic Acids Res., 32, 2004
1XUE
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STRUCTURE OF GTGGAATGCAATGGAAC HAIRPIN, NMR, 10 STRUCTURES
Descriptor:DNA (5'-D(*GP*TP*GP*GP*AP*AP*TP*GP*CP*AP*AP*TP*GP*GP*AP*AP*C)-3')
Authors:Zhu, L., Chou, S.-H., Reid, B.R.
Deposit date:1996-08-26
Release date:1997-03-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A single G-to-C change causes human centromere TGGAA repeats to fold back into hairpins.
Proc.Natl.Acad.Sci.USA, 93, 1996
1ZHU
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DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3'), NMR, 10 STRUCTURES
Descriptor:DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3')
Authors:Zhu, L., Chou, S.-H., Xu, J., Reid, B.R.
Deposit date:1996-01-24
Release date:1996-07-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA.
Nat.Struct.Biol., 2, 1995
1TYA
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STRUCTURAL ANALYSIS OF A SERIES OF MUTANTS OF TYROSYL-TRNA SYNTHETASE: ENHANCEMENT OF CATALYSIS BY HYDROPHOBIC INTERACTIONS
Descriptor:TYROSYL-tRNA SYNTHETASE, TYROSINE
Authors:Brown, K.A., De Meester, P., Blow, D.M.
Deposit date:1992-07-06
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Analysis of a Series of Mutants of Tyrosyl-tRNA Synthetase: Enhancement of Catalysis by Hydrophobic Interactions
To be Published
1TYB
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STRUCTURAL ANALYSIS OF A SERIES OF MUTANTS OF TYROSYL-TRNA SYNTHETASE: ENHANCEMENT OF CATALYSIS BY HYDROPHOBIC INTERACTIONS
Descriptor:TYROSYL-tRNA SYNTHETASE, TYROSINE
Authors:Brown, K.A., De Meester, P., Blow, D.M.
Deposit date:1992-07-06
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Analysis of a Series of Mutants of Tyrosyl-tRNA Synthetase: Enhancement of Catalysis by Hydrophobic Interactions
To be Published
1TYC
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STRUCTURAL ANALYSIS OF A SERIES OF MUTANTS OF TYROSYL-TRNA SYNTHETASE: ENHANCEMENT OF CATALYSIS BY HYDROPHOBIC INTERACTIONS
Descriptor:TYROSYL-tRNA SYNTHETASE
Authors:Brown, K.A., Brick, P., De Meester, P., Blow, D.M.
Deposit date:1992-07-06
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Analysis of a Series of Mutants of Tyrosyl-tRNA Synthetase: Enhancement of Catalysis by Hydrophobic Interactions
To be Published
1TYD
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STRUCTURE OF TYROSYL-TRNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Descriptor:TYROSYL-tRNA SYNTHETASE, TYROSINE
Authors:Brown, K.A., De Meester, P., Blow, D.M.
Deposit date:1992-07-06
Release date:1994-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate.
J.Mol.Biol., 208, 1989
2TS1
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STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Descriptor:TYROSYL-TRNA SYNTHETASE
Authors:Brick, P., Bhat, T.N., Blow, D.M.
Deposit date:1989-06-29
Release date:1989-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate.
J.Mol.Biol., 208, 1989
3TS1
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STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE
Descriptor:TYROSYL-TRNA SYNTHETASE, PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER
Authors:Monteilhet, C., Brick, P., Blow, D.M.
Deposit date:1989-06-29
Release date:1989-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate.
J.Mol.Biol., 208, 1989
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