Author results

1MUV
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SHEARED A(ANTI)-A(ANTI) BASE PAIRS IN A DESTABILIZING 2X2 INTERNAL LOOP: THE NMR STRUCTURE OF 5'(RGGCAAGCCU)2
Descriptor:5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M., Burkard, M.E., Schroeder, S.J., Krugh, T.R., Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV1
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THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2
Descriptor:5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3'
Authors:Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV2
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THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2
Descriptor:5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1MV6
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THE TANDEM, SHEARED PP PAIRS IN 5'(RGGCPPGCCU)2
Descriptor:5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3'
Authors:Znosko, B.M., Burkard, M.E., Krugh, T.R., Turner, D.H.
Deposit date:2002-09-24
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2
Biochemistry, 41, 2002
1BW7
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SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A REPLICABLE DIFLUOROTOLUENE-ADENINE PAIR
Descriptor:DNA (5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*AP*CP*AP*AP*TP*GP*CP*G)-3')
Authors:Guckian, K.M., Krugh, T.R., Kool, E.T.
Deposit date:1998-09-30
Release date:1998-10-07
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair.
Nat.Struct.Biol., 5, 1998
1EEK
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SOLUTION STRUCTURE OF A NONPOLAR, NON HYDROGEN BONDED BASE PAIR SURROGATE IN DNA.
Descriptor:5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*AP*CP*(MBZ)P*AP*TP*GP*CP*G)-3'
Authors:Kool, E.T., Krugh, T.R., Guckian, K.M.
Deposit date:2000-02-01
Release date:2000-02-16
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA
J.Am.Chem.Soc., 122, 2000
1EKA
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NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Descriptor:RNA (5'-R(*GP*AP*GP*UP*GP*CP*UP*C)-3')
Authors:Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.
Deposit date:2000-03-07
Release date:2000-11-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Biochemistry, 39, 2000
1EKD
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NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Descriptor:RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3')
Authors:Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.
Deposit date:2000-03-07
Release date:2000-11-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
Biochemistry, 39, 2000
1HS1
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SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA)
Descriptor:5'-R(*GP*CP*GP*UP*UP*AP*AP*CP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H., Culyba, M., Volkman, H., Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1HS2
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SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA)
Descriptor:5'-R(*GP*CP*GP*UP*UP*AP*AP*GP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H., Fountain, M.A., Krugh, T.R.
Deposit date:2000-12-22
Release date:2001-08-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of a six-nucleotide RNA hairpin loop found in Escherichia coli, r(UUAAGU).
Biochemistry, 40, 2001
1HS3
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SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA)
Descriptor:5'-R(*GP*CP*GP*UP*UP*AP*AP*UP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H., Culyba, M., Volkman, H., Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1HS4
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SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA)
Descriptor:5'-R(*GP*CP*GP*UP*UP*AP*AP*AP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H., Culyba, M., Volkman, H., Krugh, T.R.
Deposit date:2000-12-22
Release date:2003-09-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops: r(UUAAUU), r(UUAAAU), r(UUAACU)
To be Published
1HS8
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SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA)
Descriptor:5'-R(*GP*CP*GP*UP*CP*AP*AP*UP*UP*CP*GP*CP*A)-3'
Authors:Zhang, H., Ricart, B., Huck, M., Krugh, T.R.
Deposit date:2000-12-25
Release date:2003-09-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Characterization of Six-Nucleotide RNA Hairpin loops r(UCAAUU)
To be Published
1NTQ
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5'(DCCUCCUU)3':3'(RAGGAGGAAA)5'
Descriptor:5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3', 5'-D(*CP*CP*UP*CP*CP*UP*U)-3'
Authors:Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTS
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5'(DCCPUPCPCPUPUP)3':3'(RAGGAGGAAA)5', WHERE P=PROPYNYL
Descriptor:5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3', 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3'
Authors:Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1NTT
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5'(DCPCPUPCPCPUPUP)3':(RAGGAGGAAA)5', WHERE P=PROPYNYL
Descriptor:5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3', 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3'
Authors:Znosko, B.M., Barnes III, T.W., Krugh, T.R., Turner, D.H.
Deposit date:2003-01-30
Release date:2003-06-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines
J.Am.Chem.Soc., 125, 2003
1TUT
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J4/5 LOOP FROM THE CANDIDA ALBICANS AND CANDIDA DUBLINIENSIS GROUP I INTRONS
Descriptor:5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Authors:Znosko, B.M., Kennedy, S.D., Wille, P.C., Krugh, T.R., Turner, D.H.
Deposit date:2004-06-25
Release date:2004-12-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
1XV0
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SOLUTION NMR STRUCTURE OF RNA INTERNAL LOOP WITH THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCGAAGCCG
Descriptor:5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3'
Authors:Chen, G., Znosko, B.M., Kennedy, S.D., Krugh, T.R., Turner, D.H.
Deposit date:2004-10-26
Release date:2004-11-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
2DD1
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THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCAAAGCCG
Descriptor:5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3'
Authors:Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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AN ALTERNATING SHEARED AA PAIR IN 5'GGUGAAGGCU/3'PCCGAAGCCG: I. THE MAJOR CONFORMATION WITH A6/A15/A16 STACK
Descriptor:5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'
Authors:Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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AN ALTERNATING SHEARED AA PAIR IN 5'GGUGAAGGCU/3'PCCGAAGCCG: II. THE MINOR CONFORMATION WITH A6/A5/A16 STACK
Descriptor:5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'
Authors:Chen, G., Kennedy, S.D., Krugh, T.R., Turner, D.H.
Deposit date:2006-01-19
Release date:2006-06-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2H49
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THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA OF DEINOCOCCUS RADIODURANS DIFFERS FROM THE STRUCTURE IN THE CRYSTAL OF THE RIBOSOMAL SUBUNIT
Descriptor:5'-R(*GP*GP*CP*UP*AP*AP*GP*AP*C)-3', 5'-R(*GP*UP*CP*GP*AP*AP*GP*CP*C)-3'
Authors:Shankar, N.
Deposit date:2006-05-23
Release date:2006-11-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.
Biochemistry, 45, 2006
2IRN
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THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2
Descriptor:5'-R(P*GP*CP*UP*GP*AP*GP*GP*CP*U)-3'
Authors:Tolbert, B.S.
Deposit date:2006-10-15
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
Biochemistry, 46, 2007
2IRO
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THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2
Descriptor:5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'
Authors:Tolbert, B.S.
Deposit date:2006-10-16
Release date:2007-02-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
Biochemistry, 46, 2007
2JSE
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NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOOP FROM RIBOSOMAL RNA.
Descriptor:RNA (5'-R(*GP*GP*AP*GP*UP*GP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*AP*UP*CP*UP*CP*C)-3')
Authors:Shankar, N.
Deposit date:2007-07-03
Release date:2007-11-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Reveals the Absence of Hydrogen Bonding in Adjacent UU and AG Mismatches in an Isolated Internal Loop from Ribosomal RNA
Biochemistry, 46, 2007
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