Author results

5B0O
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STRUCTURE OF THE FLIH-FLII COMPLEX
Descriptor:Flagellum-specific ATP synthase, Flagellar assembly protein FliH, ADENOSINE-5'-DIPHOSPHATE
Authors:Imada, K., Uchida, Y., Kinoshita, M., Namba, K., Minamino, T.
Deposit date:2015-11-02
Release date:2016-03-23
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator
Proc.Natl.Acad.Sci.USA, 113, 2016
1A05
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CRYSTAL STRUCTURE OF THE COMPLEX OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM THIOBACILLUS FERROOXIDANS WITH 3-ISOPROPYLMALATE
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE, MAGNESIUM ION, 3-ISOPROPYLMALIC ACID
Authors:Imada, K., Inagaki, K., Matsunami, H., Kawaguchi, H., Tanaka, H., Tanaka, N., Namba, K.
Deposit date:1997-12-09
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism.
Structure, 6, 1998
2D4V
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CRYSTAL STRUCTURE OF NAD DEPENDENT ISOCITRATE DEHYDROGENASE FROM ACIDITHIOBACILLUS THIOOXIDANS
Descriptor:isocitrate dehydrogenase, CITRATE ANION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Imada, K., Tamura, T., Namba, K., Inagaki, K.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity
Proteins, 70, 2008
2D4W
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CRYSTAL STRUCTURE OF GLYCEROL KINASE FROM CELLULOMONAS SP. NT3060
Descriptor:glycerol kinase, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Imada, K., Tamura, T., Namba, K., Inagaki, K.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of glycerol kinase from Cellulomonas sp. NT3060
To be Published
2D4X
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CRYSTAL STRUCTURE OF A 26K FRAGMENT OF HAP3 (FLGL)
Descriptor:Flagellar hook-associated protein 3
Authors:Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
2D4Y
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CRYSTAL STRUCTURE OF A 49K FRAGMENT OF HAP1 (FLGK)
Descriptor:Flagellar hook-associated protein 1
Authors:Imada, K., Matsunami, H., Samatey, A.F., Nagashima, S., Namba, K.
Deposit date:2005-10-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the bacterial flagellar hook-filament junction
To be Published
2DPY
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CRYSTAL STRUCTURE OF THE FLAGELLAR TYPE III ATPASE FLII
Descriptor:Flagellum-specific ATP synthase, ADENOSINE-5'-DIPHOSPHATE
Authors:Imada, K., Namba, K., Minamino, T.
Deposit date:2006-05-18
Release date:2006-12-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits
Proc.Natl.Acad.Sci.Usa, 104, 2007
3A7M
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STRUCTURE OF FLIT, THE FLAGELLAR TYPE III CHAPERONE FOR FLID
Descriptor:Flagellar protein fliT
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2009-09-29
Release date:2010-04-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insight into the regulatory mechanisms of interactions of the flagellar type III chaperone FliT with its binding partners.
Proc.Natl.Acad.Sci.USA, 107, 2010
1IPD
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THREE-DIMENSIONAL STRUCTURE OF A HIGHLY THERMOSTABLE ENZYME, 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS THERMOPHILUS AT 2.2 ANGSTROMS RESOLUTION
Descriptor:3-ISOPROPYLMALATE DEHYDROGENASE, SULFATE ION
Authors:Imada, K., Sato, M., Tanaka, N., Katsube, Y., Matsuura, Y., Oshima, T.
Deposit date:1992-01-29
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution.
J.Mol.Biol., 222, 1991
3A5I
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STRUCTURE OF THE CYTOPLASMIC DOMAIN OF FLHA
Descriptor:Flagellar biosynthesis protein flhA
Authors:Imada, K., Saijo-Hamano, Y., Shimada, M., Namba, K.
Deposit date:2009-08-07
Release date:2010-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export
Mol.Microbiol., 76, 2010
3AJW
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STRUCTURE OF FLIJ, A SOLUBLE COMPONENT OF FLAGELLAR TYPE III EXPORT APPARATUS
Descriptor:Flagellar fliJ protein, MERCURY (II) ION
Authors:Imada, K., Ibuki, T., Minamino, T., Namba, K.
Deposit date:2010-06-23
Release date:2011-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Common architecture of the flagellar type III protein export apparatus and F- and V-type ATPases
Nat.Struct.Mol.Biol., 18, 2011
3W0D
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STRUCTURE OF ELASTASE INHIBITOR AFUEI (CYRSTAL FORM I)
Descriptor:Elastase inhibitor AFUEI
Authors:Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
Deposit date:2012-10-29
Release date:2013-05-15
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray Structure Analysis and Characterization of AFUEI, an Elastase Inhibitor from Aspergillus fumigatus
J.Biol.Chem., 288, 2013
3W0E
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STRUCTURE OF ELASTASE INHIBITOR AFUEI (CRYSTAL FORM II)
Descriptor:Elastase inhibitor AFUEI
Authors:Imada, K., Sakuma, M., Okumura, Y., Ogawa, K., Nikai, T., Homma, M.
Deposit date:2012-10-29
Release date:2013-05-15
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray Structure Analysis and Characterization of AFUEI, an Elastase Inhibitor from Aspergillus fumigatus
J.Biol.Chem., 288, 2013
2ZF8
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CRYSTAL STRUCTURE OF MOTY
Descriptor:Component of sodium-driven polar flagellar motor
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2007-12-25
Release date:2008-07-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZOV
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM I)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, M.
Deposit date:2008-06-09
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
2ZVZ
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF MOTB FROM SALMONELLA (CRYSTAL FORM III)
Descriptor:Chemotaxis protein motB
Authors:Imada, K., Kojima, S., Namba, K., Homma, S.
Deposit date:2008-11-26
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stator assembly and activation mechanism of the flagellar motor by the periplasmic region of MotB
Mol.Microbiol., 73, 2009
3AJC
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STRUCTURE OF THE MC DOMAIN OF FLIG (PEV), A CW-BIASED MUTANT
Descriptor:Flagellar motor switch protein fliG
Authors:Imada, K., Minamino, T., Kinoshita, M., Namba, K.
Deposit date:2010-05-27
Release date:2011-05-11
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insight into the rotational switching mechanism of the bacterial flagellar motor
Plos Biol., 9, 2011
3W1C
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STRUCTURE OF A PRESSURE SENSITIVE YFP VARIANT YFP-G1
Descriptor:Green Fluorescent protein
Authors:Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
Deposit date:2012-11-14
Release date:2013-10-02
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013
3W1D
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STRUCTURE OF A PRESSURE SENSITIVE YFP VARIANT YFP-G3
Descriptor:Green Fluorescent protein
Authors:Imada, K., Yoshizawa, K., Kinoshita, M., Watanabe, T.M.
Deposit date:2012-11-14
Release date:2013-10-02
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013
2D4U
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CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE BACTERIAL SERINE CHEMORECEPTOR TSR
Descriptor:Methyl-accepting chemotaxis protein I
Authors:Imada, K., Tajima, H., Namba, K., Sakuma, M., Homma, M., Kawagishi, I.
Deposit date:2005-10-24
Release date:2006-11-14
Last modified:2011-10-19
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Ligand specificity determined by differentially arranged common ligand-binding residues in the bacterial amino acid chemoreceptors Tsr and Tar.
J.Biol.Chem., 2011
3ADY
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CRYSTAL STRUCTURE OF DOTD FROM LEGIONELLA
Descriptor:DotD
Authors:Imada, K., Nakano, N., Kubori, T., Kinoshita, M., Nagai, H.
Deposit date:2010-01-29
Release date:2010-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Legionella DotD: insights into the relationship between type IVB and type II/III secretion systems
Plos Pathog., 6, 2010
1VGL
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CRYSTAL STRUCTURE OF TETRAMERIC KAIB FROM T.ELONGATUS BP-1
Descriptor:Circadian clock protein kaiB, MERCURY (II) ION
Authors:Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Namba, K., Ishiura, M.
Deposit date:2004-04-27
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex.
J.Biol.Chem., 280, 2005
2BGY
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FIT OF THE X-RAY STRUCUTRE OF THE BATERIAL FLAGELLAR HOOK FRAGMENT FLGE31 INTO AN EM MAP FROM THE HOOK OF CAULOBACTER CRESCENTUS.
Descriptor:FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., DeRosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (20 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
2BGZ
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ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
Descriptor:FLAGELLAR HOOK PROTEIN FLGE
Authors:Shaikh, T.R., Thomas, D.R., Chen, J.Z., Samatey, F.A., Matsunami, H., Imada, K., Namba, K., Derosier, D.J.
Deposit date:2005-01-06
Release date:2005-01-27
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (12 Å)
Cite:A Partial Atomic Structure for the Flagellar Hook of Salmonella Typhimurium.
Proc.Natl.Acad.Sci.USA, 102, 2005
5H72
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STRUCTURE OF THE PERIPLASMIC DOMAIN OF FLIP
Descriptor:Flagellar biosynthetic protein FliP
Authors:Fukumura, T., Kawaguchi, T., Saijo-Hamano, Y., Namba, K., Minamino, T., Imada, K.
Deposit date:2016-11-16
Release date:2017-08-02
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Assembly and stoichiometry of the core structure of the bacterial flagellar type III export gate complex
PLoS Biol., 15, 2017
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