Author results

1VTT
  • Download 1vtt
  • View 1vtt
Molmil generated image of 1vtt
GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC RESOLUTION: THE CRYSTAL STRUCTURE OF D(CGCGTG)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
Authors:Ho, P.S., Frederick, C.A., Quigley, G.J., Van Der Marel, G.A., Van Boom, J.H., Wang, A.H.-J., Rich, A.
Deposit date:1988-08-18
Release date:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)
Embo J., 4, 1985
4GRE
  • Download 4gre
  • View 4gre
Molmil generated image of 4gre
DNA HOLLIDAY JUNCTION STABILIZED BY IODINE HALOGEN BOND. I2J CONSTRUCT OF RELATED REFERENCE
Descriptor:DNA (5'-D(*CP*CP*GP*GP*TP*AP*(IOU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3')
Authors:Ho, P.S., Carter, M.
Deposit date:2012-08-24
Release date:2013-07-31
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GS2
  • Download 4gs2
  • View 4gs2
Molmil generated image of 4gs2
DNA HOLLIDAY JUNCTION STABILIZED BY IODINE HALOGEN BOND. I1J CONSTRUCT IN RELATED REFERENCE.
Descriptor:DNA (5'-D(*CP*CP*GP*GP*TP*AP*(5IU)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3')
Authors:Ho, P.S., Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSG
  • Download 4gsg
  • View 4gsg
Molmil generated image of 4gsg
DNA HOLLIDAY JUNCTION STABILIZED BY CHLORINE HALOGEN BOND. CL1J CONSTRUCT OF RELATED REFERENCE.
Descriptor:DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UCL)P*CP*GP*G)-3')
Authors:Ho, P.S., Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2013-12-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSI
  • Download 4gsi
  • View 4gsi
Molmil generated image of 4gsi
DNA HOLLIDAY JUNCTION STABILIZED BY FLUORINE HALOGEN BOND. F2J CONSTRUCT OF RELATED REFERENCE.
Descriptor:DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UFP)P*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3')
Authors:Ho, P.S., Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
1D40
  • Download 1d40
  • View 1d40
Molmil generated image of 1d40
BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2
Descriptor:DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3'), COPPER (II) ION, COPPER (II) CHLORIDE
Authors:Geierstanger, B.H., Kagawa, T.F., Chen, S.-L., Quigley, G.J., Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1FHY
  • Download 1fhy
  • View 1fhy
Molmil generated image of 1fhy
PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION
Descriptor:DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3'), 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION
Authors:Eichman, B.F., Mooers, B.H.M., Alberti, M., Hearst, J.E., Ho, P.S.
Deposit date:2000-08-02
Release date:2001-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
1FHZ
  • Download 1fhz
  • View 1fhz
Molmil generated image of 1fhz
PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION
Descriptor:DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN
Authors:Eichman, B.F., Mooers, B.H.M., Alberti, M., Hearst, J.E., Ho, P.S.
Deposit date:2000-08-02
Release date:2001-04-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
1D39
  • Download 1d39
  • View 1d39
Molmil generated image of 1d39
COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2
Descriptor:DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3'), COPPER (II) ION, SODIUM ION
Authors:Kagawa, T.F., Geierstanger, B.H., Wang, A.H.-J., Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Covalent modification of guanine bases in double-stranded DNA. The 1.2-A Z-DNA structure of d(CGCGCG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1D41
  • Download 1d41
  • View 1d41
Molmil generated image of 1d41
STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG)
Descriptor:DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3'), MAGNESIUM ION
Authors:Zhou, G., Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG).
Biochemistry, 29, 1990
1DCV
  • Download 1dcv
  • View 1dcv
Molmil generated image of 1dcv
B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE
Descriptor:DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3')
Authors:Eichman, B.F., Vargason, J.M., Mooers, B.H.M., Ho, P.S.
Deposit date:1999-11-05
Release date:2000-04-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1DCW
  • Download 1dcw
  • View 1dcw
Molmil generated image of 1dcw
STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
Descriptor:DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), SODIUM ION
Authors:Eichman, B.F., Vargason, J.M., Mooers, B.H.M., Ho, P.S.
Deposit date:1999-11-05
Release date:2000-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1F69
  • Download 1f69
  • View 1f69
Molmil generated image of 1f69
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
Descriptor:DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), MAGNESIUM ION, COBALT HEXAMMINE(III)
Authors:Vargason, J.M., Eichman, B.F., Ho, P.S.
Deposit date:2000-06-20
Release date:2000-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6C
  • Download 1f6c
  • View 1f6c
Molmil generated image of 1f6c
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE
Descriptor:DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), SPERMINE
Authors:Vargason, J.M., Eichman, B.F., Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6E
  • Download 1f6e
  • View 1f6e
Molmil generated image of 1f6e
CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
Descriptor:DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M., Eichman, B.F., Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6I
  • Download 1f6i
  • View 1f6i
Molmil generated image of 1f6i
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGM5CC
Descriptor:DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M., Eichman, B.F., Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6J
  • Download 1f6j
  • View 1f6j
Molmil generated image of 1f6j
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGBR5CC
Descriptor:DNA (5'-D(*GP*GP*CP*GP*(CBR)P*C)-3')
Authors:Vargason, J.M., Eichman, B.F., Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1IH1
  • Download 1ih1
  • View 1ih1
Molmil generated image of 1ih1
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE RESOLVED TO 2.0 ANGSTROMS
Descriptor:5'-D(*GP*GP*CP*GP*CP*C)-3', MAGNESIUM ION, COBALT HEXAMMINE(III)
Authors:Vargason, J.M., Henderson, K., Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH2
  • Download 1ih2
  • View 1ih2
Molmil generated image of 1ih2
CRYSTAL STRUCTURE OF GGBR5CGBR5CC
Descriptor:5'-D(*GP*GP*(CBR)P*GP*(CBR)P*C)-3'
Authors:Vargason, J.M., Henderson, K., Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH3
  • Download 1ih3
  • View 1ih3
Molmil generated image of 1ih3
MULTI-CONFORMATION CRYSTAL STRUCTURE OF GGM5CGM5CC
Descriptor:5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3'
Authors:Vargason, J.M., Henderson, K., Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH4
  • Download 1ih4
  • View 1ih4
Molmil generated image of 1ih4
MULTI-CONFORMATION CRYSTAL STRUCTURE OF GGM5CGCC
Descriptor:5'-D(*GP*GP*(5CM)P*GP*CP*C)-3'
Authors:Vargason, J.M., Henderson, K., Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH6
  • Download 1ih6
  • View 1ih6
Molmil generated image of 1ih6
MULTI-CONFORMATION CRYSTAL STRUCTURE OF GGBR5CGCC
Descriptor:5'-D(*GP*GP*(CBR)P*GP*CP*C)-3'
Authors:Vargason, J.M., Henderson, K., Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1L6B
  • Download 1l6b
  • View 1l6b
Molmil generated image of 1l6b
CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG
Descriptor:5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3', CALCIUM ION
Authors:Vargason, J.M., Ho, P.S.
Deposit date:2002-03-08
Release date:2002-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution.
J.Biol.Chem., 277, 2002
1P4Y
  • Download 1p4y
  • View 1p4y
Molmil generated image of 1p4y
EFFECT OF SEQUENCE ON THE CONFORMATIONAL GEOMETRY OF DNA HOLLIDAY JUNCTIONS
Descriptor:5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', SODIUM ION
Authors:Hays, F.A., Vargason, J.M., Ho, P.S.
Deposit date:2003-04-24
Release date:2003-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry, 42, 2003
1P4Z
  • Download 1p4z
  • View 1p4z
Molmil generated image of 1p4z
EFFECT OF SEQUENCE ON THE CONFORMATIONAL GEOMETRY OF DNA HOLLIDAY JUNCTIONS
Descriptor:5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3', SODIUM ION
Authors:Hays, F.A., Vargason, J.M., Ho, P.S.
Deposit date:2003-04-24
Release date:2003-09-02
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry, 42, 2003