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1S7Z
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BU of 1s7z by Molmil
Structure of Ocr from Bacteriophage T7
Descriptor: CESIUM ION, Gene 0.3 protein
Authors:Walkinshaw, M.D, Taylor, P, Sturrock, S.S, Atanasiu, C, Berg, T, Henderson, R.M, Edwardson, J.M, Dryden, D.T.
Deposit date:2004-01-30
Release date:2004-02-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure of Ocr from Bacteriophage T7, a Protein that Mimics B-Form DNA
Mol.Cell, 9, 2002
7P9K
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BU of 7p9k by Molmil
BrxU, GmrSD-family Type IV restriction enzyme
Descriptor: CHLORIDE ION, DUF262 domain-containing protein, GLYCEROL, ...
Authors:Picton, D.M, Luyten, Y, Morgan, R.D, Nelson, A, Smith, D.L, Dryden, D.T.F, Hinton, J.C.D, Blower, T.R.
Deposit date:2021-07-27
Release date:2021-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses.
Nucleic Acids Res., 49, 2021
7P9M
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BU of 7p9m by Molmil
BrxU, GmrSD-family Type IV restriction enzyme
Descriptor: CHLORIDE ION, DUF262 domain-containing protein, SULFATE ION
Authors:Picton, D.M, Luyten, Y, Morgan, R.D, Nelson, A, Smith, D.L, Dryden, D.T.F, Hinton, J.C.D, Blower, T.R.
Deposit date:2021-07-27
Release date:2021-12-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses.
Nucleic Acids Res., 49, 2021
2Y7H
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BU of 2y7h by Molmil
Atomic model of the DNA-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534.
Descriptor: 5'-D(*GP*TP*TP*CP*AP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*GP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*CP*AP*CP*GP*TP*CP*GP*AP*CP*GP *TP*TP*GP*AP*AP*C)-3', S-ADENOSYLMETHIONINE, ...
Authors:Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F.
Deposit date:2011-01-31
Release date:2011-02-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (18 Å)
Cite:The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein.
Nucleic Acids Res., 37, 2009
2Y7C
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BU of 2y7c by Molmil
Atomic model of the Ocr-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534.
Descriptor: GENE 0.3 PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN
Authors:Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F.
Deposit date:2011-01-31
Release date:2011-02-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (18 Å)
Cite:The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein.
Nucleic Acids Res., 37, 2009
2C7P
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BU of 2c7p by Molmil
HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAH
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*G*GP*AP*TP*GP*(5CM*2PR)*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*CP*GP*CP*AP*TP*CP*C)-3', ...
Authors:Neely, R.K, Daujotyte, D, Grazulis, S, Magennis, S.W, Dryden, D.T.F, Klimasauskas, S, Jones, A.C.
Deposit date:2005-11-25
Release date:2005-12-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes.
Nucleic Acids Res., 33, 2005
2KMG
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BU of 2kmg by Molmil
The structure of the KlcA and ArdB proteins show a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro
Descriptor: KlcA
Authors:Serfiotis-Mitsa, D, Herbert, A.P, Roberts, G.A, Soares, D.C, White, J.H, Blakely, G.W, Uhrin, D, Dryden, D.T.F.
Deposit date:2009-07-28
Release date:2009-12-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro
Nucleic Acids Res., 38, 2010
2W82
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BU of 2w82 by Molmil
The structure of ArdA
Descriptor: ORF18
Authors:McMahon, S.A, Roberts, G.A, Carter, L.G, Cooper, L.P, Liu, H, White, J.H, Johnson, K.A, Sanghvi, B, Oke, M, Walkinshaw, M.D, Blakely, G, Naismith, J.H, Dryden, D.T.F.
Deposit date:2009-01-08
Release date:2009-01-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Extensive DNA Mimicry by the Arda Anti-Restriction Protein and its Role in the Spread of Antibiotic Resistance.
Nucleic Acids Res., 37, 2009
2WJ9
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BU of 2wj9 by Molmil
ArdB
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Weikart, N.D, Roberts, G, Johnson, K.A, Oke, M, Cooper, L.P, McMahon, S.A, White, J.H, Liu, H, Carter, L.G, Walkinshaw, M.D, Blakely, G.W, Naismith, J.H, Dryden, D.T.F.
Deposit date:2009-05-25
Release date:2010-08-18
Last modified:2018-05-02
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
6R9G
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BU of 6r9g by Molmil
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2019-04-03
Release date:2020-02-26
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
2X3D
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BU of 2x3d by Molmil
Crystal Structure of SSo6206 from Sulfolobus solfataricus P2
Descriptor: SSO6206
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, McMahon, S.A, McEwan, A.R, White, M.F, Naismith, J.H.
Deposit date:2010-01-24
Release date:2010-07-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Scottish Structural Proteomics Facility: targets, methods and outputs.
J. Struct. Funct. Genomics, 11, 2010
8Q56
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BU of 8q56 by Molmil
PglX methyltransferase of Salmonella BREX phage defence system (aka BrxX) bound to inhibitor Ocr
Descriptor: Protein Ocr, S-ADENOSYLMETHIONINE, site-specific DNA-methyltransferase (adenine-specific)
Authors:Went, S.C, Blower, T.R.
Deposit date:2023-08-08
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and rational engineering of the PglX methyltransferase and specificity factor for BREX phage defence.
Nat Commun, 15, 2024
8C45
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BU of 8c45 by Molmil
PglX methyltransferase from the Salmonella BREX phage defence system (aka BrxX)
Descriptor: S-ADENOSYLMETHIONINE, site-specific DNA-methyltransferase (adenine-specific)
Authors:Blower, T.R, Went, S.C.
Deposit date:2023-01-01
Release date:2024-07-10
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and rational engineering of the PglX methyltransferase and specificity factor for BREX phage defence.
Nat Commun, 15, 2024
6R9B
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BU of 6r9b by Molmil
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2019-04-03
Release date:2020-02-26
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7
Elife, 2020
2XU2
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BU of 2xu2 by Molmil
Crystal Structure of the hypothetical protein PA4511 from Pseudomonas aeruginosa
Descriptor: CITRIC ACID, UPF0271 PROTEIN PA4511
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, McMahon, S.A, White, M.F, Naismith, J.H.
Deposit date:2010-10-14
Release date:2011-01-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2C7O
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BU of 2c7o by Molmil
HhaI DNA methyltransferase complex with 13mer oligonucleotide containing 2-aminopurine adjacent to the target base (PCGC:GMGC) and SAH
Descriptor: 5'-D(*T*GP*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP *C)-3', 5'-D(*T*GP*TP*CP*AP*(2PR)*CP*GP*CP*AP*TP*CP *C)-3', MODIFICATION METHYLASE HHAI, ...
Authors:Daujotyte, D, Grazulis, S.
Deposit date:2005-11-25
Release date:2005-12-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes.
Nucleic Acids Res., 33, 2005
2C7R
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BU of 2c7r by Molmil
HhaI DNA methyltransferase (T250G mutant) complex with oligonucleotide containing 2-aminopurine as a target base (GPGC:GMGC) and SAH
Descriptor: 5'-D(*G*GP*AP*TP*GP*(5CM)*GP*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*(2PR)*GP*CP*AP*TP*CP*C)-3', GLYCEROL, ...
Authors:Daujotyte, D, Grazulis, S.
Deposit date:2005-11-27
Release date:2005-12-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes.
Nucleic Acids Res., 33, 2005
2C7Q
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BU of 2c7q by Molmil
HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine outside the recognition sequence (paired with G) and SAH
Descriptor: 5'-D(*T*GP*GP*(2PR)*GP*GP*(5CM)*GP*CP*TP*GP* AP*C)-3', 5'-D(*T*GP*TP*CP*AP*GP*CP*GP*CP*CP*GP*CP*C)-3', CITRIC ACID, ...
Authors:Daujotyte, D, Grazulis, S.
Deposit date:2005-11-27
Release date:2005-12-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes
Nucleic Acids Res., 33, 2005
2X5T
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BU of 2x5t by Molmil
Crystal structure of ORF131 from Sulfolobus islandicus rudivirus 1
Descriptor: MALONATE ION, ORF 131
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, Naismith, J.H, White, M.F.
Deposit date:2010-02-10
Release date:2010-07-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2X7B
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BU of 2x7b by Molmil
Crystal structure of the N-terminal acetylase Ard1 from Sulfolobus solfataricus P2
Descriptor: CHLORIDE ION, COENZYME A, N-ACETYLTRANSFERASE SSO0209
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, Mackay, D, White, M.F, Taylor, G.L, Naismith, J.H.
Deposit date:2010-02-25
Release date:2010-07-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2X5R
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BU of 2x5r by Molmil
Crystal Structure of the hypothetical protein ORF126 from Pyrobaculum spherical virus
Descriptor: HYPOTHETICAL PROTEIN ORF126, ZINC ION
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, White, M.F, Naismith, J.H.
Deposit date:2010-02-10
Release date:2010-07-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2X4K
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BU of 2x4k by Molmil
Crystal structure of SAR1376, a putative 4-oxalocrotonate tautomerase from the methicillin-resistant Staphylococcus aureus (MRSA)
Descriptor: 4-OXALOCROTONATE TAUTOMERASE, ACETATE ION, PHOSPHATE ION, ...
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, White, M.F, Naismith, J.H.
Deposit date:2010-02-01
Release date:2010-07-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2X3N
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BU of 2x3n by Molmil
Crystal structure of pqsL, a probable FAD-dependent monooxygenase from Pseudomonas aeruginosa
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PROBABLE FAD-DEPENDENT MONOOXYGENASE
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, White, M.F, Naismith, J.H.
Deposit date:2010-01-25
Release date:2010-07-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2X4H
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BU of 2x4h by Molmil
Crystal Structure of the hypothetical protein SSo2273 from Sulfolobus solfataricus
Descriptor: HYPOTHETICAL PROTEIN SSO2273, ZINC ION
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, White, M.F, Naismith, J.H.
Deposit date:2010-01-31
Release date:2010-07-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
2IBS
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BU of 2ibs by Molmil
Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing 2-aminopurine at the target position
Descriptor: 5'-D(*GP*AP*CP*AP*TP*CP*GP*(6MA)P*AP*C)-3', 5'-D(*GP*TP*TP*CP*GP*(2PR)P*TP*GP*TP*C)-3', 5'-DEOXY-5'-[2-(AMINO)ETHYLTHIO]ADENOSINE, ...
Authors:Pljevaljcic, G, Lenz, T, Scheidig, A.J, Weinhold, E.
Deposit date:2006-09-12
Release date:2007-05-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:2-Aminopurine Flipped into the Active Site of the Adenine-Specific DNA Methyltransferase M.TaqI: Crystal Structures and Time-Resolved Fluorescence
J.Am.Chem.Soc., 129, 2007

 

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