Author results

101D
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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
Authors:Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
Deposit date:1994-12-14
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
109D
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VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 5-(2-IMIDAZOLINYL)-2-[2-(4-HYDROXYPHENYL)-5-BENZIMIDAZOLYL]BENZIMIDAZOLE, MAGNESIUM ION
Authors:Czarny, A., Boykin, D.W., Wood, A.A., Nunn, C.M., Neidle, S., Zhao, M., Wilson, W.D.
Deposit date:1995-02-15
Release date:1995-05-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Variability in DNA minor groove width recognised by ligand binding: the crystal structure of a bis-benzimidazole compound bound to the DNA duplex d(CGCGAATTCGCG)2.
Nucleic Acids Res., 23, 1995
126D
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CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
155C
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THE STRUCTURE OF PARACOCCUS DENITRIFICANS CYTOCHROME C550
Descriptor:CYTOCHROME C550, PROTOPORPHYRIN IX CONTAINING FE
Authors:Timkovich, R.
Deposit date:1976-08-01
Release date:1976-08-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of Paracoccus denitrificans cytochrome c550.
J.Biol.Chem., 251, 1976
158D
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CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA
Descriptor:DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3'), CALCIUM ION
Authors:Grzeskowiak, K., Goodsell, D.S., Kaczor-Grzeskowiak, M., Cascio, D., Dickerson, R.E.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
Biochemistry, 32, 1993
167D
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THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS
Descriptor:DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3')
Authors:Goodsell, D.S., Kaczor-Grzeskowiak, M., Dickerson, R.E.
Deposit date:1994-04-04
Release date:1994-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
J.Mol.Biol., 239, 1994
196D
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CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION
Descriptor:DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3'), CALCIUM ION
Authors:Goodsell, D.S., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1994-11-07
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.
Biochemistry, 34, 1995
1A04
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THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM
Descriptor:NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL
Authors:Baikalov, I., Schroder, I., Kaczor-Grzeskowiak, M., Cascio, D., Gunsalus, R.P., Dickerson, R.E.
Deposit date:1997-12-08
Release date:1998-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:NarL dimerization? Suggestive evidence from a new crystal form
Biochemistry, 37, 1998
1ANA
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HELIX GEOMETRY AND HYDRATION IN AN A-DNA TETRAMER. IC-C-G-G
Descriptor:DNA (5'-D(*(C38)P*CP*GP*G)-3')
Authors:Conner, B.N., Yoon, C., Dickerson, J.L., Dickerson, R.E.
Deposit date:1982-06-04
Release date:1982-07-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G
J.Mol.Biol., 174, 1984
1BNA
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STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Drew, H.R., Wing, R.M., Takano, T., Broka, C., Tanaka, S., Itakura, K., Dickerson, R.E.
Deposit date:1981-01-26
Release date:1981-05-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a B-DNA dodecamer: conformation and dynamics.
Proc.Natl.Acad.Sci.USA, 78, 1981
1BTW
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EPISELECTION: NOVEL KI ~NANOMOLAR INHIBITORS OF SERINE PROTEASES SELECTED BY BINDING OR CHEMISTRY ON AN ENZYME SURFACE
Descriptor:BETA-TRYPSIN, N-(tert-butoxycarbonyl)-L-alanyl-N-{(1S)-5-ammonio-1-[hydroxy(3-hydroxypropoxy)boranyl]pentyl}-L-valinamide, CALCIUM ION
Authors:Stroud, R.M., Katz, B.A., Finer-Moore, J.
Deposit date:1995-05-17
Release date:1995-10-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface.
Biochemistry, 34, 1995
1BTX
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EPISELECTION: NOVEL KI ~NANOMOLAR INHIBITORS OF SERINE PROTEASES SELECTED BY BINDING OR CHEMISTRY ON AN ENZYME SURFACE
Descriptor:BETA-TRYPSIN, N-(tert-butoxycarbonyl)-L-alanyl-N-[(1S)-5-amino-1-(diethoxyboranyl)pentyl]-L-valinamide, CALCIUM ION
Authors:Stroud, R.M., Katz, B.A., Finer-Moore, J.
Deposit date:1995-05-17
Release date:1995-10-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface.
Biochemistry, 34, 1995
1BTY
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CRYSTAL STRUCTURE OF BETA-TRYPSIN IN COMPLEX WITH BENZAMIDINE
Descriptor:BETA-TRYPSIN, CALCIUM ION, BENZAMIDINE
Authors:Stroud, R.M., Katz, B.A., Finer-Moore, J.
Deposit date:1995-05-17
Release date:1995-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface.
Biochemistry, 34, 1995
1BTZ
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EPISELECTION: NOVEL KI ~NANOMOLAR INHIBITORS OF SERINE PROTEASES SELECTED BY BINDING OR CHEMISTRY ON AN ENZYME SURFACE
Descriptor:BETA-TRYPSIN, N-(tert-butoxycarbonyl)-L-alanyl-N-{(1R)-5-ammonio-1-[hydroxy(methoxy)boranyl]pentyl}-L-valinamide, CALCIUM ION
Authors:Stroud, R.M., Katz, B.A., Finer-Moore, J.
Deposit date:1995-05-17
Release date:1995-10-15
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Episelection: novel Ki approximately nanomolar inhibitors of serine proteases selected by binding or chemistry on an enzyme surface.
Biochemistry, 34, 1995
1D16
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STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS
Descriptor:DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3')
Authors:Chattopadhyaya, R., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1988-04-12
Release date:1989-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.
J.Mol.Biol., 211, 1990
1D23
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THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS
Descriptor:DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Grzeskowiak, K., Yanagi, K., Prive, G.G., Dickerson, R.E.
Deposit date:1991-05-29
Release date:1991-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals.
J.Biol.Chem., 266, 1991
1D29
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CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG
Descriptor:DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Authors:Larsen, T.A., Kopka, M.L., Dickerson, R.E.
Deposit date:1991-05-23
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.
Biochemistry, 30, 1991
1D30
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THE STRUCTURE OF DAPI BOUND TO DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
Authors:Larsen, T., Goodsell, D.S., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1991-01-04
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of DAPI bound to DNA.
J.Biomol.Struct.Dyn., 7, 1989
1D43
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DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
Authors:Quintana, J.R., Lipanov, A.A., Dickerson, R.E.
Deposit date:1991-06-04
Release date:1992-04-15
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Biochemistry, 30, 1991
1D44
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DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
Authors:Quintana, J.R., Lipanov, A.A., Dickerson, R.E.
Deposit date:1991-06-04
Release date:1992-04-15
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Biochemistry, 30, 1991
1D45
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DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, MAGNESIUM ION
Authors:Quintana, J.R., Lipanov, A.A., Dickerson, R.E.
Deposit date:1991-06-04
Release date:1992-04-15
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Biochemistry, 30, 1991
1D46
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DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
Authors:Quintana, J.R., Lipanov, A.A., Dickerson, R.E.
Deposit date:1991-06-04
Release date:1992-04-15
Last modified:2011-08-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Biochemistry, 30, 1991
1D49
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THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G
Descriptor:DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Quintana, J.R., Grzeskowiak, K., Yanagi, K., Dickerson, R.E.
Deposit date:1991-09-17
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G.
J.Mol.Biol., 225, 1992
1D56
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ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G
Descriptor:DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3'), CALCIUM ION
Authors:Yuan, H., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-19
Release date:1992-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G.
Biochemistry, 31, 1992
1D57
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ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G
Descriptor:DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Yuan, H., Quintana, J., Dickerson, R.E.
Deposit date:1992-02-19
Release date:1992-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G.
Biochemistry, 31, 1992