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456D
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*CP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T., Ono, A., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:1999-03-06
Release date:2000-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs. I. An N(6)-methoxyadenine residue forms a Watson-Crick pair with a cytosine residue in a B-DNA duplex.
J.Mol.Biol., 294, 1999
1WQ2
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NEUTRON CRYSTAL STRUCTURE OF DISSIMILATORY SULFITE REDUCTASE D (DSRD)
Descriptor:Protein dsvD, SULFATE ION
Authors:Chatake, T., Mizuno, N., Voordouw, G., Higuchi, Y., Arai, S., Tanaka, I., Niimura, N.
Deposit date:2004-09-19
Release date:2005-09-19
Last modified:2018-03-07
Method:NEUTRON DIFFRACTION (2.4 Å)
Cite:Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris.
Acta Crystallogr.,Sect.D, 59, 2003
1EDR
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM
Descriptor:5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, SPERMINE
Authors:Chatake, T., Hikima, T., Ono, A., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2000-01-28
Release date:2000-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
3AJ8
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X-RAY ANALYSIS OF CRYSTAL OF PROTEINASE K OBTAINED FROM H2O SOLUTION USING PEG 8000
Descriptor:Proteinase K, CALCIUM ION, GLYCEROL
Authors:Chatake, T., Ishikawa, T., Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
3AJ9
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X-RAY ANALYSIS OF CRYSTAL OF PROTEINASE K OBTAINED FROM D2O SOLUTION USING PEG 8000
Descriptor:Proteinase K, CALCIUM ION, GLYCEROL
Authors:Chatake, T., Ishikawa, T., Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
4FS5
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CRYSTAL STRUCTURE OF THE Z-DNA HEXAMER CGCGCG AT 500 MM MGCL2
Descriptor:DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, CHLORIDE ION
Authors:Chatake, T., Sunami, T.
Deposit date:2012-06-26
Release date:2013-05-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2
J.Inorg.Biochem., 124, 2013
4FS6
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CRYSTAL STRUCTURE OF THE Z-DNA HEXAMER CGCGCG AT 500 MM CACL2
Descriptor:DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), CALCIUM ION, CHLORIDE ION
Authors:Chatake, T., Sunami, T.
Deposit date:2012-06-27
Release date:2013-05-15
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2
J.Inorg.Biochem., 124, 2013
457D
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chatake, T., Ono, A., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:1999-03-06
Release date:2000-01-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis.
J.Mol.Biol., 294, 1999
1IU5
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X-RAY CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROM PYROCOCCUS FURIOSUS
Descriptor:rubredoxin, FE (III) ION
Authors:Chatake, T., Kurihara, K., Tanaka, I., Tsyba, I., Bau, R., Jenney, F.E., Adams, M.W.W., Niimura, N.
Deposit date:2002-02-27
Release date:2002-08-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
1IU6
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NEUTRON CRYSTAL STRUCTURE OF THE RUBREDOXIN MUTANT FROM PYROCOCCUS FURIOSUS
Descriptor:rubredoxin, FE (III) ION
Authors:Chatake, T., Kurihara, K., Tanaka, I., Tsyba, I., Bau, R., Jenney, F.E., Adams, M.W.W., Niimura, N.
Deposit date:2002-02-27
Release date:2002-08-27
Last modified:2018-12-05
Method:NEUTRON DIFFRACTION (1.6 Å)
Cite:A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
1V9G
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NEUTRON CRYSTALLOGRAPHIC ANALYSIS OF THE Z-DNA HEXAMER CGCGCG
Descriptor:5'-D(*CP*GP*CP*GP*CP*G)-3', N,N'-BIS(3-AMMONIOPROPYL)BUTANE-1,4-DIAMINIUM
Authors:Chatake, T., Tanaka, I., Niimura, N.
Deposit date:2004-01-26
Release date:2005-01-26
Last modified:2018-12-05
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Acta Crystallogr.,Sect.D, 61, 2005
1WOE
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X-RAY STRUCTURE OF A Z-DNA HEXAMER D(CGCGCG)
Descriptor:Z-DNA hexamer, SPERMINE
Authors:Chatake, T., Tanaka, I., Umino, H., Arai, S., Niimura, N.
Deposit date:2004-08-15
Release date:2005-07-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The hydration structure of a Z-DNA hexameric duplex determined by a neutron diffraction technique.
Acta Crystallogr.,Sect.D, 61, 2005
3WBO
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CRYSTAL STRUCTURE ANALYSIS OF THE Z-DNA HEXAMER CGCGCG WITH 40 MM NACL
Descriptor:DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Chatake, T.
Deposit date:2013-05-20
Release date:2014-05-14
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Structural fluctuation observed in Z-DNA d(CGCGCG)2 in the absence of divalent metal cations and polyamines
J.SYNCHROTRON RADIAT., 20, 2013
4ZZ4
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NEUTRON CRYSTAL STRUCTURE OF RIBONUCLEASE A DETERMINED BY THE REAL SPACE D/H CONTRAST METHOD
Descriptor:Ribonuclease pancreatic, ISOPROPYL ALCOHOL
Authors:Chatake, T., Fujiwara, S.
Deposit date:2015-05-22
Release date:2016-04-06
Last modified:2018-11-28
Method:NEUTRON DIFFRACTION (1.798 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
5D6U
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X-RAY CRYSTAL STRUCTURE OF RIBONUCLEASE A DETERMINED FOR THE REAL SPACE D/H CONTRAST METHOD
Descriptor:Ribonuclease pancreatic, ISOPROPYL ALCOHOL
Authors:Chatake, T., Fujiwara, S.
Deposit date:2015-08-13
Release date:2016-04-06
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
5D97
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NEUTRON CRYSTAL STRUCTURE OF H2O-SOLVENT RIBONUCLEASE A
Descriptor:Ribonuclease pancreatic, ISOPROPYL ALCOHOL
Authors:Chatake, T., Fujiwara, S.
Deposit date:2015-08-18
Release date:2016-04-06
Last modified:2018-12-05
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:A technique for determining the deuterium/hydrogen contrast map in neutron macromolecular crystallography
Acta Crystallogr D Struct Biol, 72, 2016
4DWW
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CRYSTAL STRUCTURE OF NATTOKINASE FROM BACILLUS SUBTILIS NATTO
Descriptor:Subtilisin NAT, CALCIUM ION
Authors:Chatake, T., Yanagisawa, Y.
Deposit date:2012-02-27
Release date:2012-03-14
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Purification, crystallization and preliminary X-ray diffraction experiment of nattokinase from Bacillus subtilis natto
Acta Crystallogr.,Sect.F, 66, 2010
1I3T
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T., Hikima, T., Chatake, T., Masaru, T., Sunami, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-02-16
Release date:2001-09-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex.
J.Biochem.(Tokyo), 130, 2001
1I47
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATT(MO4)CGCG): THE WATSON-CRICK TYPE AND WOBBLE N4-METHOXYCYTIDINE/GUANOSINE BASE PAIRS IN B-DNA
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(C45)P*GP*CP*GP)-3', MAGNESIUM ION
Authors:Hossain, M.T., Hikima, T., Chatake, T., Tsunoda, M., Sunami, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-02-20
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on damaged DNAs: III. N(4)-methoxycytosine can form both Watson-Crick type and wobbled base pairs in a B-form duplex
J.Biochem.(Tokyo), 130, 2001
1J8L
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MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCAAATTMO4CGCG): THE WATSON-CRICK TYPE N4-METHOXYCYTIDINE/ADENOSINE BASE PAIR IN B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(C45)P*GP*CP*G)-3'), MAGNESIUM ION
Authors:Hossain, M.T., Sunami, T., Tsunoda, M., Hikima, T., Chatake, T., Ueno, Y., Matsuda, A., Takenaka, A.
Deposit date:2001-05-22
Release date:2001-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic studies on damaged DNAs IV. N(4)-methoxycytosine shows a second face for Watson-Crick base-pairing, leading to purine transition mutagenesis.
Nucleic Acids Res., 29, 2001
2ZWB
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NEUTRON CRYSTAL STRUCTURE OF WILD TYPE HUMAN LYSOZYME IN D2O
Descriptor:Lysozyme C
Authors:Chiba-Kamoshida, K., Matsui, T., Chatake, T., Ohhara, T., Ostermann, A., Tanaka, I., Yutani, K., Niimura, N.
Deposit date:2008-12-02
Release date:2009-12-08
Last modified:2018-03-07
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme
To be Published
3FE0
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HUMAN LYSOZYME IN D2O
Descriptor:Lysozyme C
Authors:Chiba-Kamoshida, K., Matsui, T., Chatake, T., Ohhara, T., Ostermann, A., Tanaka, I., Yutani, K., Niimura, N.
Deposit date:2008-11-27
Release date:2009-12-08
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme hydrogen
To be Published
1WQY
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X-RAY STRUCTURAL ANALYSIS OF B-DNA DECAMER D(CCATTAATGG)2 CRYSTAL GROWN IN D2O SOLUTION
Descriptor:5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3'
Authors:Arai, S., Chatake, T., Ohhara, T., Kurihara, K., Tanaka, I., Suzuki, N., Fujimoto, Z., Mizuno, H., Niimura, N.
Deposit date:2004-10-07
Release date:2005-06-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements
Nucleic Acids Res., 33, 2005
1WQZ
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COMPLICATED WATER ORIENTATIONS IN THE MINOR GROOVE OF B-DNA DECAMER D(CCATTAATGG)2 OBSERVED BY NEUTRON DIFFRACTION MEASUREMENTS
Descriptor:5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3'
Authors:Arai, S., Chatake, T., Ohhara, T., Kurihara, K., Tanaka, I., Suzuki, N., Fujimoto, Z., Mizuno, H., Niimura, N.
Deposit date:2004-10-07
Release date:2005-06-21
Last modified:2018-07-04
Method:NEUTRON DIFFRACTION (3 Å)
Cite:Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements
Nucleic Acids Res., 33, 2005
3KMF
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ROOM TEMPERATURE TIME-OF-FLIGHT NEUTRON DIFFRACTION STUDY OF DEOXY HUMAN NORMAL ADULT HEMOGLOBIN
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kovalevsky, A.Y., Morimoto, Y., Chatake, T.
Deposit date:2009-11-10
Release date:2010-04-21
Last modified:2018-06-13
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Direct Determination of Protonation States of Histidine Residues in a 2 A Neutron Structure of Deoxy-Human Normal Adult Hemoglobin and Implications for the Bohr Effect.
J.Mol.Biol., 398, 2010
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