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1AH2
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BU of 1ah2 by Molmil
SERINE PROTEASE PB92 FROM BACILLUS ALCALOPHILUS, NMR, 18 STRUCTURES
Descriptor: SERINE PROTEASE PB92
Authors:Boelens, R, Schipper, D, Martin, J.R, Karimi-Nejad, Y, Mulder, F, Zwan, J.V.D, Mariani, M.
Deposit date:1997-04-11
Release date:1998-04-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of serine protease PB92 from Bacillus alcalophilus presents a rigid fold with a flexible substrate-binding site.
Structure, 5, 1997
1LCC
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BU of 1lcc by Molmil
STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), Lac Repressor, ...
Authors:Chuprina, V.P, Rullmann, J.A.C, Lamerichs, R.M.J.N, Van Boom, J.H, Boelens, R, Kaptein, R.
Deposit date:1993-03-25
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics.
J.Mol.Biol., 234, 1993
1LCD
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BU of 1lcd by Molmil
STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
Descriptor: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'), Lac Repressor, ...
Authors:Chuprina, V.P, Rullmann, J.A.C, Lamerichs, R.M.J.N, Van Boom, J.H, Boelens, R, Kaptein, R.
Deposit date:1993-03-25
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics.
J.Mol.Biol., 234, 1993
1CCN
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BU of 1ccn by Molmil
DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL
Descriptor: CRAMBIN
Authors:Bonvin, A.M.J.J, Rullmann, J.A.C, Lamerichs, R.M.J.N, Boelens, R, Kaptein, R.
Deposit date:1993-04-14
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Direct NOE refinement of biomolecular structures using 2D NMR data
J.Biomol.NMR, 1, 1991
1CCM
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BU of 1ccm by Molmil
DIRECT NOE REFINEMENT OF CRAMBIN FROM 2D NMR DATA USING A SLOW-COOLING ANNEALING PROTOCOL
Descriptor: CRAMBIN
Authors:Bonvin, A.M.J.J, Rullmann, J.A.C, Lamerichs, R.M.J.N, Boelens, R, Kaptein, R.
Deposit date:1993-04-14
Release date:1993-10-31
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:"Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin.
Proteins, 15, 1993
1LQC
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BU of 1lqc by Molmil
LAC REPRESSOR HEADPIECE (RESIDUES 1-56), NMR, 32 STRUCTURES
Descriptor: LAC REPRESSOR
Authors:Slijper, M, Bonvin, A.M.J.J, Boelens, R, Kaptein, R.
Deposit date:1996-08-13
Release date:1997-02-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Refined structure of lac repressor headpiece (1-56) determined by relaxation matrix calculations from 2D and 3D NOE data: change of tertiary structure upon binding to the lac operator.
J.Mol.Biol., 259, 1996
1CJG
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BU of 1cjg by Molmil
NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX
Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3'), PROTEIN (LAC REPRESSOR)
Authors:Spronk, C.A.E.M, Bonvin, A.M.J.J, Radha, P.K, Melacini, G, Boelens, R, Kaptein, R.
Deposit date:1999-04-14
Release date:2000-01-01
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The solution structure of Lac repressor headpiece 62 complexed to a symmetrical lac operator.
Structure Fold.Des., 7, 1999
1SFV
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BU of 1sfv by Molmil
PORCINE PANCREAS PHOSPHOLIPASE A2, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: CALCIUM ION, PHOSPHOLIPASE A2
Authors:Van Den Berg, B, Tessari, M, Boelens, R, Dijkman, R, Kaptein, R, De Haas, G.H, Verheij, H.M.
Deposit date:1996-02-20
Release date:1996-07-11
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of porcine pancreatic phospholipase A2 complexed with micelles and a competitive inhibitor.
J.Biomol.NMR, 5, 1995
1SFW
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BU of 1sfw by Molmil
PORCINE PANCREAS PHOSPHOLIPASE A2, NMR, 18 STRUCTURES
Descriptor: CALCIUM ION, PHOSPHOLIPASE A2
Authors:Van Den Berg, B, Tessari, M, Boelens, R, Dijkman, R, Kaptein, R, De Haas, G.H, Verheij, H.M.
Deposit date:1996-02-23
Release date:1996-07-11
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of porcine pancreatic phospholipase A2 complexed with micelles and a competitive inhibitor.
J.Biomol.NMR, 5, 1995
1ARR
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BU of 1arr by Molmil
RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor: ARC REPRESSOR
Authors:Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1ARQ
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BU of 1arq by Molmil
RELAXATION MATRIX REFINEMENT OF THE SOLUTION STRUCTURE OF THE ARC REPRESSOR
Descriptor: ARC REPRESSOR
Authors:Bonvin, A.M.J.J, Vis, H, Burgering, M.J.M, Breg, J.N, Boelens, R, Kaptein, R.
Deposit date:1993-08-24
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.
J.Mol.Biol., 236, 1994
1RGD
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BU of 1rgd by Molmil
STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX CALCULATIONS
Descriptor: GLUCOCORTICOID RECEPTOR, ZINC ION
Authors:Van Tilborg, M.A.A, Bonvin, A.M.J.J, Hard, K, Davis, A, Maler, B, Boelens, R, Yamamoto, K.R, Kaptein, R.
Deposit date:1995-01-06
Release date:1995-02-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure refinement of the glucocorticoid receptor-DNA binding domain from NMR data by relaxation matrix calculations.
J.Mol.Biol., 247, 1995
3PHY
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BU of 3phy by Molmil
PHOTOACTIVE YELLOW PROTEIN, DARK STATE (UNBLEACHED), SOLUTION STRUCTURE, NMR, 26 STRUCTURES
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Dux, P, Rubinstenn, G, Vuister, G.W, Boelens, R, Mulder, F.A.A, Hard, K, Hoff, W.D, Kroon, A, Crielaard, W, Hellingwerf, K.J, Kaptein, R.
Deposit date:1998-02-06
Release date:1998-05-27
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of the photoactive yellow protein.
Biochemistry, 37, 1998
2KEJ
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BU of 2kej by Molmil
Solution structure of a dimer of LAC repressor DNA-binding domain complexed to its natural operator O2
Descriptor: DNA (5'-D(*GP*AP*AP*AP*TP*GP*TP*GP*AP*GP*CP*GP*AP*GP*TP*AP*AP*CP*AP*AP*CP*CP*G)-3'), DNA (5'-D(P*CP*GP*GP*TP*TP*GP*TP*TP*AP*CP*TP*CP*GP*CP*TP*CP*AP*CP*AP*TP*TP*TP*C)-3'), Lactose operon repressor
Authors:Romanuka, J, Folkers, G, Biris, N, Tishchenko, E, Wienk, H, Kaptein, R, Boelens, R.
Deposit date:2009-01-30
Release date:2009-05-19
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Specificity and affinity of Lac repressor for the auxiliary operators O2 and O3 are explained by the structures of their protein-DNA complexes.
J.Mol.Biol., 390, 2009
2LKC
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BU of 2lkc by Molmil
Free B.st IF2-G2
Descriptor: Translation initiation factor IF-2
Authors:Wienk, H, Tishchenko, E, Belardinelli, R, Tomaselli, S, Dongre, R, Spurio, R, Folkers, G.E, Gualerzi, C.O, Boelens, R.
Deposit date:2011-10-10
Release date:2012-02-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Dynamics of Bacterial Translation Initiation Factor IF2.
J.Biol.Chem., 287, 2012
2LKD
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BU of 2lkd by Molmil
IF2-G2 GDP complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Translation initiation factor IF-2
Authors:Wienk, H, Tishchenko, E, Belardinelli, R, Tomaselli, S, Dongre, R, Spurio, R, Folkers, G.E, Gualerzi, C.O, Boelens, R.
Deposit date:2011-10-10
Release date:2012-02-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Dynamics of Bacterial Translation Initiation Factor IF2.
J.Biol.Chem., 287, 2012
2BJC
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BU of 2bjc by Molmil
NMR structure of a protein-DNA complex of an altered specificity mutant of the lac repressor headpiece that mimics the gal repressor
Descriptor: 5'-D(*GP*AP*AP*TP*TP*GP*TP*AP*AP*GP *CP*GP*CP*TP*TP*AP*CP*AP*AP*TP*TP*C)-3', LACTOSE OPERON REPRESSOR
Authors:Salinas, R.K, Folkers, G.E, Bonvin, A.M.J.J, Das, D, Boelens, R, Kaptein, R.
Deposit date:2005-02-01
Release date:2005-10-18
Last modified:2020-01-15
Method:SOLUTION NMR
Cite:Altered Specificity in DNA Binding by the Lac Repressor: A Mutant Lac Headpiece that Mimics the Gal Repressor
Chembiochem, 6, 2005
1HRA
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BU of 1hra by Molmil
THE SOLUTION STRUCTURE OF THE HUMAN RETINOIC ACID RECEPTOR-BETA DNA-BINDING DOMAIN
Descriptor: RETINOIC ACID RECEPTOR, ZINC ION
Authors:Knegtel, R.M.A, Katahira, M, Schilthuis, J.G, Bonvin, A.M.J.J, Boelens, R, Eib, D, Van Der Saag, P.T, Kaptein, R.
Deposit date:1993-07-25
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The solution structure of the human retinoic acid receptor-beta DNA-binding domain.
J.Biomol.NMR, 3, 1993
2KN7
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BU of 2kn7 by Molmil
Structure of the XPF-single strand DNA complex
Descriptor: DNA (5'-D(*CP*AP*GP*TP*GP*GP*CP*TP*GP*A)-3'), DNA repair endonuclease XPF
Authors:Das, D, Folkers, G.E, van Dijk, M, Jaspers, N.G.J, Hoeijmakers, J.H.J, Kaptein, R, Boelens, R.
Deposit date:2009-08-16
Release date:2010-08-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix- hairpin-helix domains in ss/ds DNA recognition
Structure, 20, 2012
1QMC
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BU of 1qmc by Molmil
C-terminal DNA-binding domain of HIV-1 integrase, NMR, 42 structures
Descriptor: HIV-1 INTEGRASE
Authors:Eijkelenboom, A.P.A.M, Sprangers, R, Hard, K, Puras Lutzke, R.A, Plasterk, R.H.A, Boelens, R, Kaptein, R.
Deposit date:1999-09-27
Release date:1999-12-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Refined Solution Structure of the C-Terminal DNA-Binding Domain of Human Immunovirus-1 Integrase.
Proteins: Struct.,Funct., Genet., 36, 1999
1MNT
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BU of 1mnt by Molmil
SOLUTION STRUCTURE OF DIMERIC MNT REPRESSOR (1-76)
Descriptor: MNT REPRESSOR
Authors:Burgering, M.J.M, Boelens, R, Gilbert, D.E, Breg, J.N, Knight, K.L, Sauer, R.T, Kaptein, R.
Deposit date:1994-06-28
Release date:1994-09-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of dimeric Mnt repressor (1-76).
Biochemistry, 33, 1994
1QEY
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BU of 1qey by Molmil
NMR Structure Determination of the Tetramerization Domain of the MNT Repressor: An Asymmetric A-Helical Assembly in Slow Exchange
Descriptor: PROTEIN (REGULATORY PROTEIN MNT)
Authors:Nooren, I.M.A, George, A.V.E, Kaptein, R, Sauer, R.T, Boelens, R.
Deposit date:1999-04-03
Release date:1999-08-18
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The tetramerization domain of the Mnt repressor consists of two right-handed coiled coils.
Nat.Struct.Biol., 6, 1999
1L1M
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BU of 1l1m by Molmil
SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O1
Descriptor: 5'-D(*AP*AP*AP*TP*TP*GP*TP*TP*AP*TP*CP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3', 5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*GP*AP*TP*AP*AP*CP*AP*AP*TP*TP*T)-3', Lactose operon repressor
Authors:Kalodimos, C.G, Bonvin, A.M.J.J, Salinas, R.K, Wechselberger, R, Boelens, R, Kaptein, R.
Deposit date:2002-02-19
Release date:2002-06-26
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain.
EMBO J., 21, 2002
1HUE
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BU of 1hue by Molmil
HISTONE-LIKE PROTEIN
Descriptor: HU PROTEIN
Authors:Vis, H, Mariani, M, Vorgias, C.E, Wilson, K.S, Kaptein, R, Boelens, R.
Deposit date:1995-05-26
Release date:1995-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the HU protein from Bacillus stearothermophilus.
J.Mol.Biol., 254, 1995
2C06
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BU of 2c06 by Molmil
NMR-based model of the complex of the toxin Kid and a 5-nucleotide substrate RNA fragment (AUACA)
Descriptor: 5'-R(*AP*UP*AP*CP*AP)-3', KID TOXIN PROTEIN
Authors:Kamphuis, M.B, Bonvin, A.M.J.J, Monti, M.C, Lemonnier, M, Munoz-Gomez, A, Van Den Heuvel, R.H.H, Diaz-Orejas, R, Boelens, R.
Deposit date:2005-08-25
Release date:2006-02-08
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Model for RNA Binding and the Catalytic Site of the Rnase Kid of the Bacterial Pard Toxin-Antitoxin System.
J.Mol.Biol., 357, 2006

 

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