Author results

1EI8
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STRUCTURAL CONSEQUENCES OF A DISCONTINUITY IN THE REPEATING TRIPEPTIDE SEQUENCE OF A COLLAGEN-LIKE TRIPLE-HELICAL PEPTIDE
Descriptor:COLLAGEN-LIKE PEPTIDE (PRO-HYP-GLY)4-PG-(PRO-HYP-GLY)5
Authors:Berman, H.M., Liu, J.
Deposit date:2000-02-24
Release date:2003-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational effects of gly-x-gly interruptions in the collagen triple helix.
J.Mol.Biol., 362, 2006
1SCJ
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CRYSTAL STRUCTURE OF SUBTILISIN-PROPEPTIDE COMPLEX
Descriptor:SUBTILISIN E, CALCIUM ION
Authors:Berman, H.M., Jain, S.C.
Deposit date:1998-04-29
Release date:1998-12-09
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of an autoprocessed Ser221Cys-subtilisin E-propeptide complex at 2.0 A resolution.
J.Mol.Biol., 284, 1998
1ZRC
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4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-ICAP38 DNA
Descriptor:5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', Catabolite gene activator, ...
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-05-19
Release date:2006-03-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J.Mol.Biol., 357, 2006
1ZRD
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4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6A;17T]ICAP38 DNA
Descriptor:5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*AP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*TP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', Catabolite gene activator, ...
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-05-19
Release date:2006-03-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J.Mol.Biol., 357, 2006
1ZRE
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4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6G;17C]ICAP38 DNA
Descriptor:5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*GP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*CP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', Catabolite gene activator, ...
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-05-19
Release date:2006-03-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J.Mol.Biol., 357, 2006
1ZRF
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4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6C;17G]ICAP38 DNA
Descriptor:5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', Catabolite gene activator, ...
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-05-19
Release date:2006-03-21
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J.Mol.Biol., 357, 2006
2B1B
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5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3' ZIF268 BINDING SITE
Descriptor:5'-D(*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3', MAGNESIUM ION
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-09-15
Release date:2005-09-27
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Signatures of protein-DNA recognition in free DNA binding sites.
J.Mol.Biol., 386, 2009
2B1C
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5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3' ZIF268 BINDING SITE
Descriptor:5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3', 5'-D(*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3', MAGNESIUM ION
Authors:Berman, H.M., Napoli, A.A.
Deposit date:2005-09-15
Release date:2005-09-27
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Signatures of protein-DNA recognition in free DNA binding sites.
J.Mol.Biol., 386, 2009
2B1D
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5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3' METHIONINE REPRESSOR BINDING SITE
Descriptor:5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
Authors:Berman, H.M., Locasale, J.W., Napoli, A.A.
Deposit date:2005-09-15
Release date:2005-09-27
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Signatures of protein-DNA recognition in free DNA binding sites.
J.Mol.Biol., 386, 2009
1CGD
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HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE
Descriptor:COLLAGEN-LIKE PEPTIDE, ACETIC ACID
Authors:Bella, J., Brodsky, B., Berman, H.M.
Deposit date:1995-06-09
Release date:1996-06-20
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Hydration structure of a collagen peptide.
Structure, 3, 1995
1O3Q
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PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Descriptor:5'-D(*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*T)-3', CATABOLITE GENE ACTIVATOR PROTEIN, ...
Authors:Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.
Deposit date:2003-03-18
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking
J.Mol.Biol., 314, 2001
1O3R
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PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Descriptor:5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', CATABOLITE GENE ACTIVATOR PROTEIN, ...
Authors:Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.
Deposit date:2003-03-18
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking
J.Mol.Biol., 314, 2001
1O3S
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PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Descriptor:5'-D(*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*T)-3', CATABOLITE GENE ACTIVATOR PROTEIN, ...
Authors:Chen, S., Ebright, R.H., Berman, H.M.
Deposit date:2003-03-18
Release date:2003-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: Alteration of DNA Binding Specificity Through Alteration of DNA Kinking
J.Mol.Biol., 314, 2001
1O3T
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PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Descriptor:5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*G)-3', CATABOLITE GENE ACTIVATOR PROTEIN, ...
Authors:Chen, S., Vojtechovsky, J., Parkinson, G.N., Ebright, R.H., Berman, H.M.
Deposit date:2003-03-18
Release date:2003-04-08
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking
J.Mol.Biol., 314, 2001
153D
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CRYSTAL STRUCTURE OF A MISPAIRED DODECAMER, D(CGAGAATTC(O6ME)GCG)2, CONTAINING A CARCINOGENIC O6-METHYLGUANINE
Descriptor:DNA (5'-D(*CP*GP*AP*GP*AP*AP*TP*TP*CP*(6OG)P*CP*G)-3')
Authors:Ginell, S.L., Vojtechovsky, J., Gaffney, B., Jones, R., Berman, H.M.
Deposit date:1993-12-16
Release date:1994-01-15
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine
Biochemistry, 33, 1994
1A3I
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X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)
Descriptor:COLLAGEN-LIKE PEPTIDE, ACETIC ACID
Authors:Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.
Deposit date:1998-01-22
Release date:1998-05-06
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).
J.Mol.Biol., 280, 1998
1A3J
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X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)
Descriptor:COLLAGEN-LIKE PEPTIDE
Authors:Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.
Deposit date:1998-01-22
Release date:1998-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).
J.Mol.Biol., 280, 1998
1AIL
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N-TERMINAL FRAGMENT OF NS1 PROTEIN FROM INFLUENZA A VIRUS
Descriptor:NONSTRUCTURAL PROTEIN NS1
Authors:Liu, J., Lynch, P.A., Chien, C., Montelione, G.T., Krug, R.M., Berman, H.M.
Deposit date:1997-04-21
Release date:1997-10-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein.
Nat.Struct.Biol., 4, 1997
1BKV
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COLLAGEN
Descriptor:T3-785, ACETIC ACID
Authors:Kramer, R.Z., Bella, J., Mayville, P., Brodsky, B., Berman, H.M.
Deposit date:1998-07-13
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Sequence dependent conformational variations of collagen triple-helical structure.
Nat.Struct.Biol., 6, 1999
1CAG
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CRYSTAL AND MOLECULAR STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9 ANGSTROM RESOLUTION
Descriptor:COLLAGEN-LIKE PEPTIDE, ACETIC ACID
Authors:Bella, J., Eaton, M., Brodsky, B., Berman, H.M.
Deposit date:1994-03-29
Release date:1994-11-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.
Science, 266, 1994
1D24
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CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE
Descriptor:DNA (5'-D(*CP*GP*CP*(6OG)P*CP*G)-3')
Authors:Ginell, S.L., Kuzmich, S., Jones, R.A., Berman, H.M.
Deposit date:1990-08-29
Release date:1992-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine.
Biochemistry, 29, 1990
1D28
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CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT: D(CGTGAATTCACG)
Descriptor:DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Authors:Narayana, N., Ginell, S.L., Russu, I.M., Berman, H.M.
Deposit date:1990-12-18
Release date:1992-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal and molecular structure of a DNA fragment: d(CGTGAATTCACG).
Biochemistry, 30, 1991
1D76
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CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS
Descriptor:DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3')
Authors:Schneider, B., Ginell, S.L., Jones, R., Gaffney, B., Berman, H.M.
Deposit date:1992-05-19
Release date:1992-09-15
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers.
Biochemistry, 31, 1992
1HIB
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THE STRUCTURE OF AN INTERLEUKIN-1 BETA MUTANT WITH REDUCED BIOACTIVITY SHOWS MULTIPLE SUBTLE CHANGES IN CONFORMATION THAT AFFECT PROTEIN-PROTEIN RECOGNITION
Descriptor:INTERLEUKIN-1 BETA
Authors:Camacho, N.P., Smith, D.R., Goldman, A., Schneider, B., Green, D., Young, P.R., Berman, H.M.
Deposit date:1993-03-29
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition.
Biochemistry, 32, 1993
1HQ7
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CRYSTALLOGRAPHIC STUDIES OF A DODECAMER B-DNA D-(GCAAACGTTTGC)2
Descriptor:5'-D(*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*C)-3'
Authors:Chen, S., Berman, H.M.
Deposit date:2000-12-14
Release date:2003-07-07
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Signatures of protein-DNA recognition in free DNA binding sites.
J.Mol.Biol., 386, 2009
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