Author results

1AA3
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C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:RECA
Authors:Aihara, H., Ito, Y., Kurumizaka, H., Terada, T., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1997-01-22
Release date:1997-07-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing.
J.Mol.Biol., 274, 1997
1B22
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RAD51 (N-TERMINAL DOMAIN)
Descriptor:DNA REPAIR PROTEIN RAD51
Authors:Aihara, H., Ito, Y., Kurumizaka, H., Yokoyama, S., Shibata, T., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1998-12-04
Release date:1999-12-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR.
J.Mol.Biol., 290, 1999
1P7D
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CRYSTAL STRUCTURE OF THE LAMBDA INTEGRASE (RESIDUES 75-356) BOUND TO DNA
Descriptor:5'-D(*CP*AP*AP*TP*GP*CP*CP*AP*AP*CP*TP*TP*T)-3', 26-MER, Integrase
Authors:Aihara, H., Kwon, H.J., Nunes-Duby, S.E., Landy, A., Ellenberger, T.
Deposit date:2003-05-01
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:A Conformational Switch Controls the DNA Cleavage Activity of Lambda Integrase
Mol.Cell, 12, 2003
2V6E
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PROTELOMERASE TELK COMPLEXED WITH SUBSTRATE DNA
Descriptor:PROTELEMORASE, TELRL, VANADATE ION
Authors:Aihara, H., Huang, W.M., Ellenberger, T.
Deposit date:2007-07-17
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:An Interlocked Dimer of the Protelomerase Telk Distorts DNA Structure for the Formation of Hairpin Telomeres
Mol.Cell, 27, 2007
6DFY
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REMODELED CRYSTAL STRUCTURE OF DNA-BOUND DUX4-HD2
Descriptor:Double homeobox protein 4, DNA (5'-D(*AP*AP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*TP*TP*CP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*A)-3')
Authors:Aihara, H., Shi, K.
Deposit date:2018-05-15
Release date:2018-09-05
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:Comment on structural basis of DUX4/IGH-driven transactivation.
Leukemia, 32, 2018
6O44
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INSIGHT INTO SUBTILISIN E-S7 CLEAVAGE PATTERN BASED ON CRYSTAL STRUCTURE AND HYDROLYSATES PEPTIDE ANALYSIS
Descriptor:Nattokinase, CALCIUM ION, SULFATE ION, ...
Authors:Tang, H., Shi, K., Aihara, H.
Deposit date:2019-02-28
Release date:2019-04-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Insight into subtilisin E-S7 cleavage pattern based on crystal structure and hydrolysates peptide analysis.
Biochem. Biophys. Res. Commun., 2019
4F41
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PROTELOMERASE TELA MUTANT R255A COMPLEXED WITH CTTG HAIRPIN DNA
Descriptor:Protelomerase, DNA hairpin
Authors:Shi, K., Aihara, H.
Deposit date:2012-05-09
Release date:2012-06-13
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Linear Chromosome-generating System of Agrobacterium tumefaciens C58: PROTELOMERASE GENERATES AND PROTECTS HAIRPIN ENDS.
J.Biol.Chem., 287, 2012
4F43
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PROTELOMERASE TELA MUTANT R255A COMPLEXED WITH CAAG HAIRPIN DNA
Descriptor:Protelomerase, DNA hairpin
Authors:Shi, K., Aihara, H.
Deposit date:2012-05-10
Release date:2012-06-13
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.354 Å)
Cite:Linear Chromosome-generating System of Agrobacterium tumefaciens C58: PROTELOMERASE GENERATES AND PROTECTS HAIRPIN ENDS.
J.Biol.Chem., 287, 2012
1Z19
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CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE(75-356) DIMER BOUND TO A COC' CORE SITE
Descriptor:5'-D(*CP*TP*CP*GP*TP*TP*CP*AP*GP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(P*TP*TP*TP*AP*TP*AP*CP*TP*AP*AP*GP*TP*TP*GP*GP*CP*AP*TP*TP*A)-3', 33-MER, ...
Authors:Biswas, T., Aihara, H., Radman-Livaja, M., Filman, D., Landy, A., Ellenberger, T.
Deposit date:2005-03-03
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
1Z1B
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CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE DIMER BOUND TO A COC' CORE SITE
Descriptor:5'-D(*CP*T*CP*GP*TP*TP*CP*AP*GP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*TP*TP*TP*AP*TP*AP*CP*TP*AP*AP*GP*TP*TP*GP*GP*CP*AP*T)-3', 29-MER, ...
Authors:Biswas, T., Aihara, H., Radman-Livaja, M., Filman, D., Landy, A., Ellenberger, T.
Deposit date:2005-03-03
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
1Z1G
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CRYSTAL STRUCTURE OF A LAMBDA INTEGRASE TETRAMER BOUND TO A HOLLIDAY JUNCTION
Descriptor:29-MER, 5'-D(*AP*CP*AP*GP*GP*TP*CP*AP*CP*TP*AP*TP*CP*AP*GP*TP*CP*AP*AP*AP*AP*TP*AP*CP*C)-3', 25-MER, ...
Authors:Biswas, T., Aihara, H., Radman-Livaja, M., Filman, D., Landy, A., Ellenberger, T.
Deposit date:2005-03-03
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:A structural basis for allosteric control of DNA recombination by lambda integrase.
Nature, 435, 2005
4DWP
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SEMET PROTELOMERASE TELA COVALENTLY COMPLEXED WITH SUBSTRATE DNA
Descriptor:Protelomerase, DNA (5'-D(*TP*TP*AP*CP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*GP*TP*AP*A)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-02-26
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0G
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PROTELOMERASE TELA/DNA HAIRPIN PRODUCT/VANADATE COMPLEX
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-03
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0J
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PROTELOMERASE TELA R255A MUTANT COMPLEXED WITH DNA HAIRPIN PRODUCT
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-04
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0P
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PROTELOMERASE TELA COVALENTLY COMPLEXED WITH SUBSTRATE DNA
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0Y
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PROTELOMERASE TELA COVALENTLY COMPLEXED WITH MUTATED SUBSTRATE DNA
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E0Z
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PROTELOMERASE TELA R205A COVALENTLY COMPLEXED WITH SUBSTRATE DNA
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*A*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4E10
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PROTELOMERASE TELA Y201A COVALENTLY COMPLEXED WITH SUBSTRATE DNA
Descriptor:Protelomerase, DNA (5'-D(*CP*AP*TP*AP*AP*(BRU)P*AP*AP*CP*AP*AP*(BRU)P*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*(BRU)P*(BRU)P*GP*(BRU)P*(BRU)P*AP*(BRU)P*(BRU)P*AP*(BRU)P*G)-3'), ...
Authors:Shi, K., Aihara, H.
Deposit date:2012-03-05
Release date:2013-02-13
Method:X-RAY DIFFRACTION (2.506 Å)
Cite:An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation.
Plos Biol., 11, 2013
4EP4
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THERMUS THERMOPHILUS RUVC STRUCTURE
Descriptor:Crossover junction endodeoxyribonuclease RuvC, MAGNESIUM ION, GLYCEROL
Authors:Chen, L., Shi, K., Yin, Z.Q., Aihara, H.
Deposit date:2012-04-17
Release date:2012-11-14
Last modified:2014-12-03
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution.
Nucleic Acids Res., 41, 2013
4EP5
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THERMUS THERMOPHILUS RUVC STRUCTURE
Descriptor:Crossover junction endodeoxyribonuclease RuvC, SULFATE ION, GLYCEROL
Authors:Chen, L., Shi, K., Yin, Z.Q., Aihara, H.
Deposit date:2012-04-17
Release date:2012-11-14
Last modified:2013-01-16
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution.
Nucleic Acids Res., 41, 2013
4F1H
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CRYSTAL STRUCTURE OF TDP2 FROM DANIO RERIO COMPLEXED WITH A SINGLE STRAND DNA
Descriptor:DNA (5'-D(P*TP*GP*CP*AP*G)-3'), Tyrosyl-DNA phosphodiesterase 2, PHOSPHATE ION, ...
Authors:Shi, K., Kurahashi, K., Aihara, H.
Deposit date:2012-05-06
Release date:2012-10-31
Last modified:2013-01-02
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4F1I
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CRYSTAL STRUCTURE OF SEMET TDP2 FROM CAENORHABDITIS ELEGANS
Descriptor:5'-tyrosyl-DNA phosphodiesterase, GLYCEROL
Authors:Shi, K., Kurahashi, K., Aihara, H.
Deposit date:2012-05-07
Release date:2012-10-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4FPV
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CRYSTAL STRUCTURE OF D. RERIO TDP2 COMPLEXED WITH SINGLE STRAND DNA PRODUCT
Descriptor:Tyrosyl-DNA phosphodiesterase 2, DNA (5'-D(P*TP*GP*CP*AP*G)-3'), SODIUM ION, ...
Authors:Shi, K., Kurahashi, K., Aihara, H.
Deposit date:2012-06-22
Release date:2012-10-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4FVA
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CRYSTAL STRUCTURE OF TRUNCATED CAENORHABDITIS ELEGANS TDP2
Descriptor:5'-tyrosyl-DNA phosphodiesterase, 1,2-ETHANEDIOL, MAGNESIUM ION, ...
Authors:Shi, K., Kurahashi, K., Aihara, H.
Deposit date:2012-06-29
Release date:2012-10-31
Last modified:2013-01-02
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2.
Nat.Struct.Mol.Biol., 19, 2012
4FW1
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CRYSTAL STRUCTURE OF TWO-DOMAIN RSV INTEGRASE COVALENTLY LINKED WITH DNA
Descriptor:Integrase
Authors:Shi, K., Aihara, H.
Deposit date:2012-06-29
Release date:2013-05-15
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A possible role for the asymmetric C-terminal domain dimer of Rous sarcoma virus integrase in viral DNA binding.
Plos One, 8, 2013
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