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1CRY
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BU of 1cry by Molmil
APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
Descriptor: CYTOCHROME C2, HEME C
Authors:Miki, K, Sogabe, S.
Deposit date:1993-12-27
Release date:1994-04-30
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis.
Acta Crystallogr.,Sect.D, 50, 1994
1QNF
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BU of 1qnf by Molmil
STRUCTURE OF PHOTOLYASE
Descriptor: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE, FLAVIN-ADENINE DINUCLEOTIDE, PHOTOLYASE
Authors:Miki, K, Kitadokoro, K.
Deposit date:1997-07-04
Release date:1998-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of DNA photolyase from Anacystis nidulans
Nat.Struct.Biol., 4, 1997
1CO6
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BU of 1co6 by Molmil
CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
Descriptor: HEME C, PROTEIN (CYTOCHROME C2)
Authors:Miki, K, Sogabe, S.
Deposit date:1999-06-05
Release date:1999-06-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Refined crystal structure of ferrocytochrome c2 from Rhodopseudomonas viridis at 1.6 A resolution.
J.Mol.Biol., 252, 1995
1IO3
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BU of 1io3 by Molmil
CRYSTAL STRUCTURE OF FERRICYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
Descriptor: CYTOCHROME C2, HEME C
Authors:Miki, K, Sogabe, S.
Deposit date:2001-01-06
Release date:2001-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the oxidized cytochrome c(2) from Blastochloris viridis.
FEBS Lett., 491, 2001
2YQS
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BU of 2yqs by Molmil
Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the product-binding form
Descriptor: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
Authors:Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQC
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BU of 2yqc by Molmil
Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the apo-like form
Descriptor: GLYCEROL, MAGNESIUM ION, UDP-N-acetylglucosamine pyrophosphorylase
Authors:Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQJ
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BU of 2yqj by Molmil
Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the reaction-completed form
Descriptor: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
Authors:Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQH
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BU of 2yqh by Molmil
Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the substrate-binding form
Descriptor: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, GLYCEROL, MAGNESIUM ION, ...
Authors:Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
Deposit date:2007-03-30
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
4V8K
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BU of 4v8k by Molmil
Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ...
Authors:Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K.
Deposit date:2013-11-22
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.006 Å)
Cite:Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom
Nature, 508, 2014
3KDO
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BU of 3kdo by Molmil
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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BU of 3kdn by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
6IED
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BU of 6ied by Molmil
Crystal structure of heme A synthase from Bacillus subtilis
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ...
Authors:Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K.
Deposit date:2018-09-13
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of heme A synthase fromBacillus subtilis.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2B3R
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BU of 2b3r by Molmil
Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2
Descriptor: Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide, SULFATE ION
Authors:Liu, L, Song, X, He, D, Komma, C, Kita, A, Verbasius, J.V, Bellamy, H, Miki, K, Czech, M.P, Zhou, G.W.
Deposit date:2005-09-20
Release date:2005-12-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha.
J.Biol.Chem., 281, 2006
1QSW
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BU of 1qsw by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A HUMAN LYSOZYME MUTANT W64C C65A
Descriptor: HUMAN LYSOZYME MUTANT
Authors:Inaka, K, Kanaya, E, Kikuchi, M, Miki, K.
Deposit date:1999-06-24
Release date:2001-08-08
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a mutant human lysozyme with a substituted disulfide bond.
Proteins, 43, 2001
3HRX
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BU of 3hrx by Molmil
Crystal structure of phenylacetic acid degradation protein PaaG
Descriptor: Probable enoyl-CoA hydratase
Authors:Kichise, T, Hisano, T, Takeda, K, Miki, K.
Deposit date:2009-06-10
Release date:2009-06-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of phenylacetic acid degradation protein PaaG from Thermus thermophilus HB8
Proteins, 76, 2009
3FF5
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BU of 3ff5 by Molmil
Crystal structure of the conserved N-terminal domain of the peroxisomal matrix-protein-import receptor, Pex14p
Descriptor: Peroxisomal biogenesis factor 14, decyl 2-trimethylazaniumylethyl phosphate
Authors:Su, J.-R, Takeda, K, Tamura, S, Fujiki, Y, Miki, K.
Deposit date:2008-12-01
Release date:2008-12-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p
Proc.Natl.Acad.Sci.USA, 106, 2009
8H8Q
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BU of 8h8q by Molmil
Fab-amyloid beta fragment complex at neutral pH
Descriptor: CHLORIDE ION, Fab, GLN-LYS-CYS-VAL-PHE-PHE-ALA-GLU-ASP-VAL-GLY-SER-ASN-CYS-GLY, ...
Authors:Kita, A, Irie, K, Irie, Y, Matsushima, Y, Miki, K.
Deposit date:2022-10-24
Release date:2023-10-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fab-amyloid beta fragment complex at neutral pH
To Be Published
4XF6
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BU of 4xf6 by Molmil
myo-inositol 3-kinase bound with its products (ADP and 1D-myo-inositol 3-phosphate)
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2014-12-26
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
4XF7
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BU of 4xf7 by Molmil
myo-inositol 3-kinase bound with its substrates (AMPPCP and myo-inositol)
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Carbohydrate/pyrimidine kinase, PfkB family, ...
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2014-12-26
Release date:2015-06-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
8JVG
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BU of 8jvg by Molmil
Crystal structure of dephospho-coenzyme A kinase
Descriptor: GTP-dependent dephospho-CoA kinase
Authors:Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
Deposit date:2023-06-28
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVC
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BU of 8jvc by Molmil
Crystal structure of dephospho-coenzyme A kinase
Descriptor: GTP-dependent dephospho-CoA kinase
Authors:Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
Deposit date:2023-06-28
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVF
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BU of 8jvf by Molmil
Crystal structure of dephospho-coenzyme A kinase
Descriptor: GTP-dependent dephospho-CoA kinase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
Deposit date:2023-06-28
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
5X0K
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BU of 5x0k by Molmil
Free serine kinase (E30Q mutant) in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0B
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BU of 5x0b by Molmil
Free serine kinase in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017
5X0E
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BU of 5x0e by Molmil
Free serine kinase (E30A mutant) in complex with phosphoserine and AMP
Descriptor: ADENOSINE MONOPHOSPHATE, Free serine kinase, MAGNESIUM ION, ...
Authors:Nagata, R, Fujihashi, M, Miki, K.
Deposit date:2017-01-20
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis
ACS Chem. Biol., 12, 2017

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