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116D
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CRYSTAL AND MOLECULAR STRUCTURE OF THE A-DNA DODECAMER D(CCGTACGTACGG): CHOICE OF FRAGMENT HELICAL AXIS
Descriptor:DNA (5'-D(*CP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*G)-3')
Authors:Bingman, C.A., Zon, G., Sundaralingam, M.
Deposit date:1993-02-10
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis.
J.Mol.Biol., 227, 1992
117D
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CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG)
Descriptor:DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3')
Authors:Bingman, C., Jain, S., Zon, G., Sundaralingam, M.
Deposit date:1993-02-10
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG).
Nucleic Acids Res., 20, 1992
1CEH
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STRUCTURE AND FUNCTION OF THE CATALYTIC SITE MUTANT ASP99ASN OF PHOSPHOLIPASE A2: ABSENCE OF CONSERVED STRUCTURAL WATER
Descriptor:PHOSPHOLIPASE A2, CALCIUM ION
Authors:Kumar, A., Sekharudu, C., Ramakrishnan, B., Dupureur, C.M., Zhu, H., Tsai, M.-D., Sundaralingam, M.
Deposit date:1994-11-16
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and function of the catalytic site mutant Asp 99 Asn of phospholipase A2: absence of the conserved structural water.
Protein Sci., 3, 1994
1D78
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HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION
Descriptor:DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
Authors:Thota, N., Li, X.H., Bingman, C., Sundaralingam, M.
Deposit date:1992-06-12
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.
Acta Crystallogr.,Sect.D, 49, 1993
1D79
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HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION
Descriptor:DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3')
Authors:Thota, N., Li, X.H., Bingman, C., Sundaralingam, M.
Deposit date:1992-06-12
Release date:1993-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.
Acta Crystallogr.,Sect.D, 49, 1993
1DN8
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STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE
Descriptor:DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3'), COBALT HEXAMMINE(III)
Authors:Brennan, R.G., Westhof, E., Sundaralingam, M.
Deposit date:1987-05-12
Release date:1988-04-16
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine.
J.Biomol.Struct.Dyn., 3, 1986
1DNS
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BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC)
Descriptor:DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3'), SPERMINE
Authors:Jain, S.C., Zon, G., Sundaralingam, M.
Deposit date:1989-02-22
Release date:1990-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC).
Biochemistry, 28, 1989
1RCF
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STRUCTURE OF THE TRIGONAL FORM OF RECOMBINANT OXIDIZED FLAVODOXIN FROM ANABAENA 7120 AT 1.40 ANGSTROMS RESOLUTION
Descriptor:FLAVODOXIN, SULFATE ION, FLAVIN MONONUCLEOTIDE
Authors:Burkhart, B., Ramakrishnan, B., Yan, H., Reedstrom, R., Markley, J., Straus, N., Sundaralingam, M.
Deposit date:1994-10-31
Release date:1995-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the trigonal form of recombinant oxidized flavodoxin from Anabaena 7120 at 1.40 A resolution.
Acta Crystallogr.,Sect.D, 51, 1995
100D
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CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING
Descriptor:DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3'), SPERMINE
Authors:Ban, C., Ramakrishnan, B., Sundaralingam, M.
Deposit date:1994-12-05
Release date:1995-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing.
Nucleic Acids Res., 22, 1994
118D
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CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES
Descriptor:DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3')
Authors:Bingman, C., Li, X., Zon, G., Sundaralingam, M.
Deposit date:1993-02-11
Release date:1993-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes.
Biochemistry, 31, 1992
137D
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A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM
Descriptor:DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3')
Authors:Ramakrishnan, B., Sundaralingam, M.
Deposit date:1993-09-15
Release date:1994-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures.
Biochemistry, 32, 1993
138D
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A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM
Descriptor:DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3')
Authors:Ramakrishnan, B., Sundaralingam, M.
Deposit date:1993-09-15
Release date:1994-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures.
Biochemistry, 32, 1993
159D
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SIDE BY SIDE BINDING OF TWO DISTAMYCIN A DRUGS IN THE MINOR GROOVE OF AN ALTERNATING B-DNA DUPLEX
Descriptor:DNA (5'-D(*IP*CP*IP*CP*IP*CP*IP*C)-3'), DISTAMYCIN A, MAGNESIUM ION
Authors:Chen, X., Ramakrishnan, B., Rao, S.T., Sundaralingam, M.
Deposit date:1994-02-10
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Binding of two distamycin A molecules in the minor groove of an alternating B-DNA duplex.
Nat.Struct.Biol., 1, 1994
160D
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HIGH RESOLUTION CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCCGGCCGGG): NOVEL INTERMOLECULAR BASE-PAIRED G*(G.C) TRIPLETS
Descriptor:DNA (5'-D(*CP*CP*CP*GP*GP*CP*CP*GP*GP*G)-3')
Authors:Ramakrishnan, B., Sundaralingam, M.
Deposit date:1994-02-10
Release date:1994-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:High resolution crystal structure of the A-DNA decamer d(CCCGGCCGGG). Novel intermolecular base-paired G*(G.C) triplets.
J.Mol.Biol., 231, 1993
161D
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A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET
Descriptor:DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3')
Authors:Ban, C., Ramakrishnan, B., Sundaralingam, M.
Deposit date:1994-02-10
Release date:1994-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet.
J.Mol.Biol., 236, 1994
194D
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X-RAY STRUCTURES OF THE B-DNA DODECAMER D(CGCGTTAACGCG) WITH AN INVERTED CENTRAL TETRANUCLEOTIDE AND ITS NETROPSIN COMPLEX
Descriptor:DNA (5'-D(*CP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*G)-3')
Authors:Balendiran, K., Rao, S.T., Sekharudu, C.Y., Zon, G., Sundaralingam, M.
Deposit date:1994-10-04
Release date:1995-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structures of the B-DNA dodecamer d(CGCGTTAACGCG) with an inverted central tetranucleotide and its netropsin complex.
Acta Crystallogr.,Sect.D, 51, 1995
195D
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X-RAY STRUCTURES OF THE B-DNA DODECAMER D(CGCGTTAACGCG) WITH AN INVERTED CENTRAL TETRANUCLEOTIDE AND ITS NETROPSIN COMPLEX
Descriptor:DNA (5'-D(*CP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*G)-3'), NETROPSIN
Authors:Balendiran, K., Rao, S.T., Sekharudu, C.Y., Zon, G., Sundaralingam, M.
Deposit date:1994-10-04
Release date:1995-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structures of the B-DNA dodecamer d(CGCGTTAACGCG) with an inverted central tetranucleotide and its netropsin complex.
Acta Crystallogr.,Sect.D, 51, 1995
1DQF
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CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS
Descriptor:RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3'), RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3'), CALCIUM ION
Authors:Xiong, Y., Sundaralingam, M.
Deposit date:2000-01-04
Release date:2000-11-13
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.
RNA, 6, 2000
1DQH
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CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS
Descriptor:RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3'), RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3')
Authors:Xiong, Y., Sundaralingam, M.
Deposit date:2000-01-04
Release date:2000-11-13
Last modified:2012-07-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge.
RNA, 6, 2000
1DVL
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CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END
Descriptor:5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3', NETROPSIN
Authors:Shi, K., Mitra, S.N., Sundaralingam, M.
Deposit date:2000-01-21
Release date:2002-03-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the 1:1 netropsin-decamer d(CCIICICCII)2 complex with a single bound netropsin.
Acta Crystallogr.,Sect.D, 58, 2002
1EFO
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CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)
Descriptor:DNA (5'-D(*CP*TP*CP*CP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3')
Authors:Sudarsanakumar, C., Xiong, Y., Sundaralingam, M.
Deposit date:2000-02-09
Release date:2000-05-29
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, d(CTCCTCTTC).r(gaagagagag).
J.Mol.Biol., 299, 2000
1EVP
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CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G)
Descriptor:DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3')
Authors:Wahl, M.C., Sundaralingam, M.
Deposit date:2000-04-20
Release date:2000-05-01
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G).
Nucleic Acids Res., 28, 2000
1FUF
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CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE
Descriptor:(5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3'), MAGNESIUM ION, SPERMINE
Authors:Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M.
Deposit date:2000-09-15
Release date:2001-11-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1IK5
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CRYSTAL STRUCTURE OF A 14MER RNA CONTAINING DOUBLE UU BULGES IN TWO CRYSTAL FORMS: A NOVEL U*(AU) INTRAMOLECULAR BASE TRIPLE
Descriptor:5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3', 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR)P*C)-3', MAGNESIUM ION
Authors:Deng, J., Xiong, Y., Sudarsanakumar, C., Shi, K., Sundaralingam, M.
Deposit date:2001-05-02
Release date:2001-11-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.
RNA, 7, 2001
1J6S
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CRYSTAL STRUCTURE OF AN RNA TETRAPLEX (UGAGGU)4 WITH A-TETRADS, G-TETRADS, U-TETRADS AND G-U OCTADS
Descriptor:5'-R(*(BRUP*GP*AP*GP*GP*U)-3', BARIUM ION, SODIUM ION
Authors:Pan, B., Xiong, Y., Shi, K., Deng, J., Sundaralingam, M.
Deposit date:2002-07-10
Release date:2003-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of an RNA purine-rich tetraplex containing adenine tetrads: implications for specific binding in RNA tetraplexes
Structure, 11, 2003