Author results

3PVX
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BINARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-FAPY) WITH DNA POLYMERASE IV
Descriptor:DNA polymerase IV, DNA (5'-D(*AP*TP*TP*(PVX)P*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3PW0
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TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-FAPY) WITH DNA POLYMERASE IV AND INCOMING DATP
Descriptor:DNA polymerase IV, DNA (5'-D(*TP*TP*(PVX)P*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3PW2
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TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-FAPY) WITH DNA POLYMERASE IV AND INCOMING DTTP
Descriptor:DNA polymerase IV, DNA (5'-D(*TP*TP*(PVX)P*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3PW4
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TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-N7-GUA) WITH DNA POLYMERASE IV AND INCOMING DATP
Descriptor:DNA polymerase IV, DNA (5'-D(*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3PW5
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TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-N7-GUA) WITH DNA POLYMERASE IV AND INCOMING DTTP
Descriptor:DNA polymerase IV, DNA (5'-D(*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3PW7
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TERNARY COMPLEX OF AFLATOXIN B1 ADDUCT MODIFIED DNA (AFB1-N7-GUA) WITH DNA POLYMERASE IV AND INCOMING DCTP
Descriptor:DNA polymerase IV, DNA (5'-D(*AP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
3T5H
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TERNARY COMPLEX OF HNE ADDUCT MODIFIED DNA (5'-CXG-3' VS 13-MER) WITH DPO4 AND INCOMING DDGT
Descriptor:DNA polymerase IV, DNA (5'-D(*CP*AP*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.
Deposit date:2011-07-27
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.
Chem.Res.Toxicol., 25, 2012
3T5J
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TERNARY COMPLEX OF HNE ADDUCT MODIFIED DNA (5'-TXG-3' VS 13-MER) WITH DPO4 AND INCOMING DDTP
Descriptor:DNA polymerase IV, DNA (5'-D(*CP*AP*TP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.
Deposit date:2011-07-27
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.
Chem.Res.Toxicol., 25, 2012
3T5K
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TERNARY COMPLEX OF HNE ADDUCT MODIFIED DNA (5'-TXG-3' VS 14-MER) WITH DPO4 AND INCOMING DDTP
Descriptor:DNA polymerase IV, DNA (5'-D(*CP*AP*TP*(HN0)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), ...
Authors:Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.
Deposit date:2011-07-27
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.
Chem.Res.Toxicol., 25, 2012
3T5L
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TERNARY COMPLEX OF HNE ADDUCT MODIFIED DNA (5'-CXG-3' VS 14-MER) WITH DPO4 AND INCOMING DDGT
Descriptor:DNA polymerase IV, DNA (5'-D(*CP*AP*CP*(HN0)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), ...
Authors:Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.
Deposit date:2011-07-27
Release date:2012-02-15
Last modified:2013-01-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.
Chem.Res.Toxicol., 25, 2012
3V6H
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REPLICATION OF N2,3-ETHENOGUANINE BY DNA POLYMERASES
Descriptor:DNA (5'-D(*TP*CP*AP*CP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*(DOC))-3'), DNA polymerase IV, ...
Authors:Zhao, L.
Deposit date:2011-12-19
Release date:2012-04-25
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Replication of n(2) ,3-ethenoguanine by DNA polymerases.
Angew.Chem.Int.Ed.Engl., 51, 2012
3V6J
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REPLICATION OF N2,3-ETHENOGUANINE BY DNA POLYMERASES
Descriptor:DNA polymerase IV, DNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*TP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*C)-3'), ...
Authors:Zhao, L.
Deposit date:2011-12-19
Release date:2012-04-25
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Replication of n(2) ,3-ethenoguanine by DNA polymerases.
Angew.Chem.Int.Ed.Engl., 51, 2012
3V6K
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REPLICATION OF N2,3-ETHENOGUANINE BY DNA POLYMERASES
Descriptor:DNA polymerase IV, DNA (5'-D(P*GP*AP*AP*GP*GP*AP*TP*TP*CP*(2DT))-3'), DNA (5'-D(*TP*CP*AP*CP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*C)-3'), ...
Authors:Zhao, L.
Deposit date:2011-12-20
Release date:2012-04-25
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Replication of n(2) ,3-ethenoguanine by DNA polymerases.
Angew.Chem.Int.Ed.Engl., 51, 2012
4EBC
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CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
Descriptor:DNA polymerase iota, 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Eoff, R.L., Ketkar, A., Banerjee, S.
Deposit date:2012-03-23
Release date:2012-06-13
Last modified:2012-07-11
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012
4EBD
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CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
Descriptor:DNA polymerase iota, 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Eoff, R.L., Ketkar, A., Banerjee, S.
Deposit date:2012-03-23
Release date:2012-06-13
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.571 Å)
Cite:A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012
4EBE
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CONFORMATIONALLY RESTRAINED NORTH-METHANOCARBA-2'-DEOXYADENOSINE CORRECTS THE ERROR-PRONE NATURE OF HUMAN DNA POLYMERASE IOTA
Descriptor:DNA polymerase iota, 5'-D(P*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*CP*TP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Eoff, R.L., Ketkar, A., Banerjee, S.
Deposit date:2012-03-23
Release date:2012-06-13
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Nucleotide-Analogue-Induced Gain of Function Corrects the Error-Prone Nature of Human DNA Polymerase iota.
J.Am.Chem.Soc., 134, 2012
4FS1
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BASE PAIRING MECHANISM OF N2,3-ETHENOGUANINE WITH DTTP BY HUMAN POLYMERASE IOTA
Descriptor:DNA 5'-D(*TP*CP*TP*(EFG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3', DNA polymerase iota, MAGNESIUM ION, ...
Authors:Zhao, L.
Deposit date:2012-06-26
Release date:2012-08-29
Last modified:2012-10-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases.
J.Biol.Chem., 287, 2012
4FS2
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BASE PAIRING MECHANISM OF N2,3-ETHENOGUANINE WITH DCTP BY HUMAN POLYMERASE IOTA
Descriptor:DNA (5'-D(*TP*CP*TP*(EFG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'), DNA polymerase iota, MAGNESIUM ION, ...
Authors:Zhao, L.
Deposit date:2012-06-26
Release date:2012-08-29
Last modified:2012-10-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases.
J.Biol.Chem., 287, 2012
4GC6
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CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH N-MC-DAMP OPPOSITE DT
Descriptor:DNA polymerase IV, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.
Deposit date:2012-07-29
Release date:2012-10-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.895 Å)
Cite:Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues.
Biochemistry, 51, 2012
4GC7
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CRYSTAL STRUCTURE OF DPO4 IN COMPLEX WITH S-MC-DADP OPPOSITE DT
Descriptor:DNA polymerase IV, DNA (5'-D(*G*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.
Deposit date:2012-07-29
Release date:2012-10-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues.
Biochemistry, 51, 2012
4JUZ
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TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA (ZERO PRIMER) WITH DNA POLYMERASE IV AND INCOMING DGTP
Descriptor:DNA polymerase IV, DNA (5'-D(P*CP*(KAG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), ...
Authors:Banerjee, S., Shanmugam, G., Stone, M.P.
Deposit date:2013-03-25
Release date:2013-08-28
Last modified:2013-10-09
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
Chem.Res.Toxicol., 26, 2013
4JV0
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RING-OPENING OF THE -OH-PDG ADDUCT IN TERNARY COMPLEXES WITH THE SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
Descriptor:DNA polymerase IV, DNA (5'-D(P*TP*(KAG)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*C)-3'), ...
Authors:Banerjee, S., Shanmugam, G., Stone, M.P.
Deposit date:2013-03-25
Release date:2013-08-28
Last modified:2013-10-09
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
Chem.Res.Toxicol., 26, 2013
4JV1
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TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DGTP
Descriptor:DNA polymerase IV, DNA (5'-D(P*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S., Shanmugam, G., Stone, M.P.
Deposit date:2013-03-25
Release date:2013-08-28
Last modified:2013-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
Chem.Res.Toxicol., 26, 2013
4JV2
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TERNARY COMPLEX OF GAMMA-OHPDG ADDUCT MODIFIED DNA WITH DNA (-1 PRIMER) POLYMERASE IV AND INCOMING DATP
Descriptor:DNA polymerase IV, DNA (5'-D(P*TP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S., Shanmugam, G., Stone, M.P.
Deposit date:2013-03-25
Release date:2013-08-28
Last modified:2013-10-09
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Ring-Opening of the gamma-OH-PdG Adduct Promotes Error-Free Bypass by the Sulfolobus solfataricus DNA Polymerase Dpo4.
Chem.Res.Toxicol., 26, 2013
1KK9
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CRYSTAL STRUCTURE OF E. COLI YCIO
Descriptor:probable translation factor yciO, SULFATE ION
Authors:Jia, J., Lunin, V.V., Sauve, V., Huang, L.-W., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2001-12-06
Release date:2002-12-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the YciO protein from Escherichia coli
PROTEINS: STRUCT.,FUNCT.,GENET., 49, 2002